Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPX93_RS11875 Genome accession   NZ_CP046749
Coordinates   2604303..2604821 (-) Length   172 a.a.
NCBI ID   WP_123163006.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2015V-1118     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2599303..2609821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS11860 aroB 2600738..2601823 (-) 1086 WP_184482921.1 3-dehydroquinate synthase -
  GPX93_RS11865 aroK 2601851..2602375 (-) 525 WP_000818616.1 shikimate kinase AroK -
  GPX93_RS11870 pilQ 2602562..2604277 (-) 1716 WP_162808987.1 type IV pilus secretin PilQ family protein Machinery gene
  GPX93_RS11875 pilP 2604303..2604821 (-) 519 WP_123163006.1 pilus assembly protein PilP Machinery gene
  GPX93_RS11880 pilO 2604811..2605401 (-) 591 WP_000157688.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPX93_RS11885 pilN 2605394..2605978 (-) 585 WP_162811704.1 PilN domain-containing protein Machinery gene
  GPX93_RS11890 pilM 2605968..2606984 (-) 1017 WP_123163007.1 type IV pilus assembly protein PilM Machinery gene
  GPX93_RS11895 - 2607127..2609604 (+) 2478 WP_184482924.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19096.31 Da        Isoelectric Point: 10.0857

>NTDB_id=407113 GPX93_RS11875 WP_123163006.1 2604303..2604821(-) (pilP) [Vibrio cholerae strain 2015V-1118]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVIRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407113 GPX93_RS11875 WP_123163006.1 2604303..2604821(-) (pilP) [Vibrio cholerae strain 2015V-1118]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCATTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCAGGTCAATATG
TCGGAATCAATAATGGCAAAGTCATCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

99.419

100

0.994
  pilP Vibrio campbellii strain DS40M4

55.814

100

0.558

Multiple sequence alignment