Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SSU1300283_RS04755 Genome accession   NZ_CP058741
Coordinates   982435..984171 (+) Length   578 a.a.
NCBI ID   WP_014636919.1    Uniprot ID   -
Organism   Streptococcus suis strain 13-00283-02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 977435..989171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS04730 (SSU1300283_00958) - 979991..980746 (+) 756 WP_013730347.1 class I SAM-dependent methyltransferase -
  SSU1300283_RS04735 (SSU1300283_00959) pcp 980743..981390 (+) 648 WP_013730348.1 pyroglutamyl-peptidase I -
  SSU1300283_RS04740 (SSU1300283_00960) - 981390..981698 (+) 309 WP_013730349.1 DUF4298 domain-containing protein -
  SSU1300283_RS04745 (SSU1300283_00961) rpsP 981823..982095 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  SSU1300283_RS04750 (SSU1300283_00962) - 982117..982359 (+) 243 WP_012028079.1 KH domain-containing protein -
  SSU1300283_RS04755 (SSU1300283_00963) rcrP 982435..984171 (+) 1737 WP_014636919.1 ABC transporter ATP-binding protein Regulator
  SSU1300283_RS04760 (SSU1300283_00964) rcrQ 984180..985949 (+) 1770 WP_002938582.1 ABC transporter ATP-binding protein Regulator
  SSU1300283_RS04765 (SSU1300283_00965) - 985993..986916 (-) 924 WP_002938584.1 polysaccharide deacetylase family protein -
  SSU1300283_RS04770 (SSU1300283_00966) - 987021..988307 (+) 1287 WP_002938586.1 homoserine dehydrogenase -
  SSU1300283_RS04775 (SSU1300283_00967) thrB 988311..989171 (+) 861 WP_002938588.1 homoserine kinase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65037.48 Da        Isoelectric Point: 6.2086

>NTDB_id=407113 SSU1300283_RS04755 WP_014636919.1 982435..984171(+) (rcrP) [Streptococcus suis strain 13-00283-02]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQENRFAEVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQKVLDMPISISKNE
EGITKSDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAGLHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=407113 SSU1300283_RS04755 WP_014636919.1 982435..984171(+) (rcrP) [Streptococcus suis strain 13-00283-02]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTAGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACTACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATTATGACCTTGGTAACCAGTCCGAGCTTGGCTTGGACAGTAGCA
GTAGCCATGCCGTTTCTAGTTTTTGTTATTTTCTATGTGGCAACAAAAACTCGTCCTCTCTCTGAAAAACAACAGAAACG
ATTGGATACTATCAACCAGTATGTTCGTGAAAATCTCATGGGTTTGCGGGTCATTCGTGCCTTTACACGTGAAGAGTTCC
AAGAAAATCGTTTTGCAGAGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCTTTGGATCCCTTGAAAACAGGCAGTCT
ACAAATCGGTGATTTAGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGAATTCAGAAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GAAGGTATTACTAAATCAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGATGGTGTGGATGTCAGACGC
TACAATCTGAAGGCACTCCGCAGCAAGATTGGCTTTATTCCACAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGGACTTCATGATGCGACAGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCACTTGGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAGCAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398

Multiple sequence alignment