Detailed information NTG0407112

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: GPX93_RS11870
• Genome accession: NZ_CP046749
• Coordinates: 2602562..2604277 (-)
• Length: 571 a.a.
• NCBI ID: WP_162808987.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 2015V-1118
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2597562..2609277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX93_RS11850	-	2598305..2599138 (-)	834	WP_000744680.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
GPX93_RS11855	-	2599208..2600683 (-)	1476	WP_123163004.1	AAA family ATPase	-
GPX93_RS11860	aroB	2600738..2601823 (-)	1086	WP_184482921.1	3-dehydroquinate synthase	-
GPX93_RS11865	aroK	2601851..2602375 (-)	525	WP_000818616.1	shikimate kinase AroK	-
GPX93_RS11870	pilQ	2602562..2604277 (-)	1716	WP_162808987.1	type IV pilus secretin PilQ family protein	Machinery gene
GPX93_RS11875	pilP	2604303..2604821 (-)	519	WP_123163006.1	pilus assembly protein PilP	Machinery gene
GPX93_RS11880	pilO	2604811..2605401 (-)	591	WP_000157688.1	type 4a pilus biogenesis protein PilO	Machinery gene
GPX93_RS11885	pilN	2605394..2605978 (-)	585	WP_162811704.1	PilN domain-containing protein	Machinery gene
GPX93_RS11890	pilM	2605968..2606984 (-)	1017	WP_123163007.1	type IV pilus assembly protein PilM	Machinery gene

Sequence

Protein

• Length: 571 a.a.
• Molecular weight: 62370.51 Da
• Isoelectric Point: 4.6119

>NTDB_id=407112 GPX93_RS11870 WP_162808987.1 2602562..2604277(-) (pilQ) [Vibrio cholerae strain 2015V-1118]
MKNGLKTYVAQTWLTLWVGLALCASSMVFSAESATANQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLK
TDVADDKLYLLDVKDFSTPVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKSVLEKEGKLIS
INFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQAL
EKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQ
VQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSTNASSIAFQVAKLG
SGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDL
SVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL
LIFVTPKVVIQ

Nucleotide

• Length: 1716 bp

>NTDB_id=407112 GPX93_RS11870 WP_162808987.1 2602562..2604277(-) (pilQ) [Vibrio cholerae strain 2015V-1118]
ATGAAAAATGGATTGAAAACTTATGTCGCACAGACTTGGCTGACCTTGTGGGTTGGTTTGGCACTTTGTGCTTCTTCCAT
GGTGTTTAGTGCTGAATCCGCTACCGCCAACCAGTTGGAAAACATCGACTTTCGGGTCAACAAAGAGAAGGCGGCGGTCT
TAATTGTCGAATTGGCTTCGCCATCGGCGGTCGTGGATGTGCAAAAAGTCCAAGAAGGGCTGAGTATTGAGCTACTGAAA
ACCGATGTGGCGGATGACAAGCTGTATCTGCTTGATGTGAAAGATTTTTCGACACCTGTTGAGAGCGTGGAAGTATTCCG
TAAAGAGCCAAGCACACAACTGGTTGTGACTGTCGATGGGGAGTTTCAGCACGATTATACCTTGAAAGGAAAATACCTTG
AAGTCGTGATCAGTAAACTCAAAGCTGATGAAAAGCCTAAGCCCAAGAGTGTCTTGGAAAAAGAAGGCAAGCTTATCTCA
ATTAACTTCCAAGATATTCCGGTGCGTAACGTACTGCAACTGATTGCCGATTATAACGGTTTCAACTTAGTGGTTTCCGA
TTCTGTGGTGGGTAACCTGACTTTACGCTTGGATGGCGTGCCTTGGCAGCAAGTGTTGGACATTATTCTGCAAGTCAAAG
GGCTCGATAAGCGGGTCGATGGCAATGTGATTTTGATTGCGCCGAAAGAGGAACTCGACTTGCGCGAGAAACAAGCGCTC
GAAAAAGCCCGTTTAGCAGAAGAGTTGGGCGATTTAAAATCAGAAATCATCAAGATTAACTTTGCCAAAGCGTCTGACAT
TGCGGCGATGATCGGCGGTGAAGGCAACGTGAACATGTTGTCTGAACGAGGTTCGATCAGCATCGACGAACGAACTAACT
CGCTATTGATCCGAGAGCTGCCCGATAATATTGCTGTGATCCGCGAGATCATTGAATCGCTGGATATTCCGGTCAAACAA
GTTCAAATCGAAGCGCGGATTGTCACCGTCAAAGAAGGTAATTTGGAGGAGCTGGGGGTACGCTGGGGCGTAATGTCGAC
CAATGGTAGCCACTCGGTCGGAGGAAGCATAGAGAGTAACTTATGGCAAAAAGGGTTATTGGCGGATGATGAATTTCCGG
TGGATGAATTCTTAAATGTGAATTTGGCTTCCACCTCTACCAATGCGTCTTCGATTGCTTTCCAAGTCGCTAAATTGGGC
TCAGGTACGTTGTTGGATTTGGAGCTTTCAGCATTACAAAATGAATCGAAGGCCGAAATCATCTCTAGCCCTCGTTTGAT
TACCACTAATAAACAGCCTGCCTATATTGAGCAAGGTACTGAGATCCCTTATCTGGAATCGTCTTCCAGTGGTGCCTCTA
CGGTCGCGTTTAAAAAAGCGGTATTGAGCTTGAAGGTGACACCACAAATCACCCCCGATAACCGCTTGGTGCTCGACTTG
AGTGTGACCCAAGACCGACGCGGTGAAACGGTGAAAACCGGTACGGGCGAAGCGGTTTCTATTGATACTCAGCGTATTGG
CACTCAAGTGTTGGTGAATAACGGAGAAACTGTGGTGTTGGGTGGCATTTTCCAACACAGCATCAATAATTCGGTAGATA
AGGTGCCACTGTTGGGGGACTTGCCTGTTTTGGGCGCGTTATTCAGACGAACCTATGAGCAAATGGGCAAAAGTGAACTG
CTGATTTTTGTCACGCCGAAAGTGGTCATTCAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (411-569)

• Bacterial type II/III secretion system short domain (Secretin_N) (255-320)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Vibrio cholerae strain A1552	99.825	100	0.998
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	99.825	100	0.998
pilQ	Vibrio campbellii strain DS40M4	78.545	96.322	0.757
pilQ	Legionella pneumophila strain ERS1305867	42.593	94.571	0.403
pilQ	Legionella pneumophila strain Lp02	42.593	94.571	0.403
comQ	Acinetobacter baylyi ADP1	39.51	100	0.396
pilQ	Acinetobacter baumannii D1279779	37.819	100	0.389
pilQ	Acinetobacter baumannii strain A118	37.819	100	0.389
pilQ	Pseudomonas aeruginosa PAK	38.698	96.848	0.375