Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPX93_RS11790 Genome accession   NZ_CP046749
Coordinates   2583650..2584282 (+) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain 2015V-1118     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2578650..2589282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS11765 - 2578715..2580631 (+) 1917 WP_123162999.1 ABC transporter ATP-binding protein -
  GPX93_RS11770 - 2580632..2581117 (+) 486 WP_001278735.1 TIGR02444 family protein -
  GPX93_RS11775 - 2581114..2582103 (+) 990 WP_123163000.1 hydrolase -
  GPX93_RS11780 - 2582232..2582441 (+) 210 WP_000586561.1 YheU family protein -
  GPX93_RS11785 - 2582538..2583407 (+) 870 WP_001274667.1 phosphoribulokinase -
  GPX93_RS11790 crp 2583650..2584282 (+) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPX93_RS11795 - 2584361..2585152 (-) 792 WP_000189091.1 DUF1338 domain-containing protein -
  GPX93_RS11800 astD 2585295..2586752 (-) 1458 WP_123163001.1 succinylglutamate-semialdehyde dehydrogenase -
  GPX93_RS11805 astA 2586762..2587781 (-) 1020 WP_000962048.1 arginine N-succinyltransferase -
  GPX93_RS11810 - 2587921..2589132 (-) 1212 WP_000215474.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=407111 GPX93_RS11790 WP_000242749.1 2583650..2584282(+) (crp) [Vibrio cholerae strain 2015V-1118]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=407111 GPX93_RS11790 WP_000242749.1 2583650..2584282(+) (crp) [Vibrio cholerae strain 2015V-1118]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACAGGCCGTATCGCACAGACTCTGCTGAACCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment