Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPX93_RS01300 Genome accession   NZ_CP046749
Coordinates   269369..269902 (+) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae strain 2015V-1118     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 264369..274902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS01285 uvrA 264410..267232 (-) 2823 WP_000357701.1 excinuclease ABC subunit UvrA -
  GPX93_RS01290 galU 267388..268260 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPX93_RS01295 qstR 268433..269077 (-) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX93_RS01300 ssb 269369..269902 (+) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  GPX93_RS01305 csrD 270026..272038 (+) 2013 WP_184482575.1 RNase E specificity factor CsrD -
  GPX93_RS01310 - 272051..273490 (+) 1440 WP_123162348.1 PilN domain-containing protein -
  GPX93_RS01315 gspM 273487..274137 (+) 651 WP_123162349.1 type II secretion system protein GspM -
  GPX93_RS01320 - 274130..274447 (+) 318 WP_089072027.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=407084 GPX93_RS01300 WP_000168287.1 269369..269902(+) (ssb) [Vibrio cholerae strain 2015V-1118]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=407084 GPX93_RS01300 WP_000168287.1 269369..269902(+) (ssb) [Vibrio cholerae strain 2015V-1118]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1YRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486

Multiple sequence alignment