Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPX93_RS01295 Genome accession   NZ_CP046749
Coordinates   268433..269077 (-) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain 2015V-1118     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 263433..274077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS01285 uvrA 264410..267232 (-) 2823 WP_000357701.1 excinuclease ABC subunit UvrA -
  GPX93_RS01290 galU 267388..268260 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPX93_RS01295 qstR 268433..269077 (-) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX93_RS01300 ssb 269369..269902 (+) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  GPX93_RS01305 csrD 270026..272038 (+) 2013 WP_184482575.1 RNase E specificity factor CsrD -
  GPX93_RS01310 - 272051..273490 (+) 1440 WP_123162348.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=407083 GPX93_RS01295 WP_001188318.1 268433..269077(-) (qstR) [Vibrio cholerae strain 2015V-1118]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=407083 GPX93_RS01295 WP_001188318.1 268433..269077(-) (qstR) [Vibrio cholerae strain 2015V-1118]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519

Multiple sequence alignment