Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY00_RS04615 Genome accession   NZ_CP046747
Coordinates   1005300..1005836 (-) Length   178 a.a.
NCBI ID   WP_001887866.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3541-04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1000300..1010836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY00_RS04595 - 1000756..1001073 (-) 318 WP_044126908.1 MSHA biogenesis protein MshK -
  GPY00_RS04600 gspM 1001066..1001716 (-) 651 WP_001887863.1 type II secretion system protein GspM -
  GPY00_RS04605 - 1001713..1003152 (-) 1440 WP_019829372.1 PilN domain-containing protein -
  GPY00_RS04610 csrD 1003165..1005122 (-) 1958 Protein_879 RNase E specificity factor CsrD -
  GPY00_RS04615 ssb 1005300..1005836 (-) 537 WP_001887866.1 single-stranded DNA-binding protein Machinery gene
  GPY00_RS04620 qstR 1006128..1006772 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY00_RS04625 galU 1006945..1007817 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY00_RS04630 uvrA 1007973..1010795 (+) 2823 WP_044126904.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 20012.21 Da        Isoelectric Point: 5.2581

>NTDB_id=407050 GPY00_RS04615 WP_001887866.1 1005300..1005836(-) (ssb) [Vibrio cholerae strain 3541-04]
MASRGVNKVILIGNLGQDPEVRYMPSGDAMVNLTVATSETWRDKATGEQKEKTEWHRVSVFGKTAEFIGEYARKGTQVYV
DGQLQTRKWQDQQGQERYTTEVVVRWPAGEVQIMGSRPQQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQY
SQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=407050 GPY00_RS04615 WP_001887866.1 1005300..1005836(-) (ssb) [Vibrio cholerae strain 3541-04]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGATGCGATGGTGAATTTAACTGTTGCAACCTCCGAAACTTGGCGTGATAAAGCCACTGGTGAGCAAAAGGAAAAAACCG
AATGGCATAGAGTGTCTGTTTTCGGTAAAACCGCTGAATTCATTGGTGAATATGCGCGTAAGGGAACCCAAGTTTATGTT
GATGGGCAACTGCAAACGCGCAAGTGGCAAGACCAGCAAGGGCAAGAGCGTTATACGACGGAAGTGGTTGTGCGTTGGCC
TGCGGGTGAAGTGCAAATTATGGGCAGTCGTCCTCAACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCACCAG
CGCAGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTAC
TCGCAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.146

100

0.831
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.517
  ssb Neisseria meningitidis MC58

43.889

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.889

100

0.444

Multiple sequence alignment