Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY00_RS04620 Genome accession   NZ_CP046747
Coordinates   1006128..1006772 (+) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain 3541-04     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1001128..1011772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY00_RS04605 - 1001713..1003152 (-) 1440 WP_019829372.1 PilN domain-containing protein -
  GPY00_RS04610 csrD 1003165..1005122 (-) 1958 Protein_879 RNase E specificity factor CsrD -
  GPY00_RS04615 ssb 1005300..1005836 (-) 537 WP_001887866.1 single-stranded DNA-binding protein Machinery gene
  GPY00_RS04620 qstR 1006128..1006772 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY00_RS04625 galU 1006945..1007817 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY00_RS04630 uvrA 1007973..1010795 (+) 2823 WP_044126904.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=407051 GPY00_RS04620 WP_001188318.1 1006128..1006772(+) (qstR) [Vibrio cholerae strain 3541-04]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=407051 GPY00_RS04620 WP_001188318.1 1006128..1006772(+) (qstR) [Vibrio cholerae strain 3541-04]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATTTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCAAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519

Multiple sequence alignment