Detailed information NTG0406995

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: SSU16085_RS00805
• Genome accession: NZ_CP058740
• Coordinates: 131275..131682 (+)
• Length: 135 a.a.
• NCBI ID: WP_024394702.1
• Uniprot ID: -
• Organism: Streptococcus suis strain 16085/3b
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 126275..136682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSU16085_RS00780 (SSU16085_00160)	-	127676..128041 (+)	366	WP_002936568.1	DUF1033 family protein	-
SSU16085_RS00785 (SSU16085_00161)	-	128076..129026 (-)	951	WP_024394700.1	S66 peptidase family protein	-
SSU16085_RS00790 (SSU16085_00162)	comGA	129112..130062 (+)	951	WP_014637312.1	competence type IV pilus ATPase ComGA	Machinery gene
SSU16085_RS00795 (SSU16085_00163)	comGB	129974..131011 (+)	1038	WP_043032925.1	competence type IV pilus assembly protein ComGB	Machinery gene
SSU16085_RS00800 (SSU16085_00164)	comGC	131013..131294 (+)	282	WP_011921720.1	competence type IV pilus major pilin ComGC	Machinery gene
SSU16085_RS00805 (SSU16085_00165)	comGD	131275..131682 (+)	408	WP_024394702.1	competence type IV pilus minor pilin ComGD	Machinery gene
SSU16085_RS00810 (SSU16085_00166)	comGE	131654..131947 (+)	294	WP_024394703.1	competence type IV pilus minor pilin ComGE	Machinery gene
SSU16085_RS00815 (SSU16085_00167)	comGF/cglF	131934..132368 (+)	435	WP_029750050.1	competence type IV pilus minor pilin ComGF	Machinery gene
SSU16085_RS00820 (SSU16085_00168)	comGG	132346..132756 (+)	411	WP_024394705.1	competence type IV pilus minor pilin ComGG	-
SSU16085_RS00825 (SSU16085_00169)	comGH	132813..133766 (+)	954	WP_024394706.1	class I SAM-dependent methyltransferase	Machinery gene
SSU16085_RS00830 (SSU16085_00170)	-	133816..135003 (+)	1188	WP_014637319.1	acetate kinase	-
SSU16085_RS00835 (SSU16085_00171)	-	135318..135869 (+)	552	WP_014636756.1	folate family ECF transporter S component	-

Sequence

Protein

• Length: 135 a.a.
• Molecular weight: 15333.50 Da
• Isoelectric Point: 9.7552

>NTDB_id=406995 SSU16085_RS00805 WP_024394702.1 131275..131682(+) (comGD) [Streptococcus suis strain 16085/3b]
MLRRKNKAFTLFESLLTLFVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSHQSVSLTIGEQEVANGRQ
AVQVPRNVEVLEGKTITFEEDGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide

• Length: 408 bp

>NTDB_id=406995 SSU16085_RS00805 WP_024394702.1 131275..131682(+) (comGD) [Streptococcus suis strain 16085/3b]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTTGTTGTCAGTTTTTTAGCTGTTTC
CCTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCTGCTAGTTCTCACCAGTCAGTTAGCTTGACTATCGGCGAACAAGAAGTGGCAAATGGTCGTCAG
GCAGTTCAGGTACCCAGAAATGTAGAAGTATTAGAGGGGAAGACCATCACATTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATACGCTTTCGGCTTAGTCGAAAGACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Streptococcus mutans UA140	47.287	95.556	0.452
comGD	Streptococcus mutans UA159	47.287	95.556	0.452
comGD/cglD	Streptococcus pneumoniae R6	46.512	95.556	0.444
comGD/cglD	Streptococcus pneumoniae TIGR4	46.512	95.556	0.444
comGD/cglD	Streptococcus pneumoniae D39	46.512	95.556	0.444
comGD/cglD	Streptococcus pneumoniae Rx1	46.512	95.556	0.444
comGD	Streptococcus gordonii str. Challis substr. CH1	46.457	94.074	0.437
comGD/cglD	Streptococcus mitis NCTC 12261	45.736	95.556	0.437
comGD/cglD	Streptococcus mitis SK321	45.736	95.556	0.437
comGD	Lactococcus lactis subsp. cremoris KW2	38.281	94.815	0.363