Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GPW86_RS14280 | Genome accession | NZ_CP046742 |
| Coordinates | 1799175..1799708 (+) | Length | 177 a.a. |
| NCBI ID | WP_000168287.1 | Uniprot ID | A0A2A1YRC3 |
| Organism | Vibrio cholerae strain 3523-03 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1794175..1804708
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPW86_RS14265 | uvrA | 1794216..1797038 (-) | 2823 | WP_123011300.1 | excinuclease ABC subunit UvrA | - |
| GPW86_RS14270 | galU | 1797194..1798066 (-) | 873 | WP_001920788.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| GPW86_RS14275 | qstR | 1798239..1798883 (-) | 645 | WP_001188318.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| GPW86_RS14280 | ssb | 1799175..1799708 (+) | 534 | WP_000168287.1 | single-stranded DNA-binding protein | Machinery gene |
| GPW86_RS14285 | csrD | 1799886..1801844 (+) | 1959 | WP_000216144.1 | RNase E specificity factor CsrD | - |
| GPW86_RS14290 | - | 1801857..1803296 (+) | 1440 | WP_076008279.1 | PilN domain-containing protein | - |
| GPW86_RS14295 | gspM | 1803293..1803943 (+) | 651 | WP_000835144.1 | type II secretion system protein GspM | - |
| GPW86_RS14300 | - | 1803936..1804253 (+) | 318 | WP_000252812.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19644.85 Da Isoelectric Point: 5.7626
>NTDB_id=406972 GPW86_RS14280 WP_000168287.1 1799175..1799708(+) (ssb) [Vibrio cholerae strain 3523-03]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=406972 GPW86_RS14280 WP_000168287.1 1799175..1799708(+) (ssb) [Vibrio cholerae strain 3523-03]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTCACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGGATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTCACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGGATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
99.435 |
100 |
0.994 |
| ssb | Glaesserella parasuis strain SC1401 |
52.198 |
100 |
0.537 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
47.778 |
100 |
0.486 |