Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPW86_RS14275 Genome accession   NZ_CP046742
Coordinates   1798239..1798883 (-) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain 3523-03     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793239..1803883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW86_RS14265 uvrA 1794216..1797038 (-) 2823 WP_123011300.1 excinuclease ABC subunit UvrA -
  GPW86_RS14270 galU 1797194..1798066 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPW86_RS14275 qstR 1798239..1798883 (-) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPW86_RS14280 ssb 1799175..1799708 (+) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  GPW86_RS14285 csrD 1799886..1801844 (+) 1959 WP_000216144.1 RNase E specificity factor CsrD -
  GPW86_RS14290 - 1801857..1803296 (+) 1440 WP_076008279.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=406971 GPW86_RS14275 WP_001188318.1 1798239..1798883(-) (qstR) [Vibrio cholerae strain 3523-03]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=406971 GPW86_RS14275 WP_001188318.1 1798239..1798883(-) (qstR) [Vibrio cholerae strain 3523-03]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCTGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTAAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519

Multiple sequence alignment