Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GPW74_RS11230 | Genome accession | NZ_CP046737 |
| Coordinates | 2461336..2461869 (+) | Length | 177 a.a. |
| NCBI ID | WP_000168287.1 | Uniprot ID | A0A2A1YRC3 |
| Organism | Vibrio cholerae strain 2015V-1126 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2456336..2466869
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPW74_RS11215 | uvrA | 2456377..2459199 (-) | 2823 | WP_085603441.1 | excinuclease ABC subunit UvrA | - |
| GPW74_RS11220 | galU | 2459355..2460227 (-) | 873 | WP_001920788.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| GPW74_RS11225 | qstR | 2460400..2461044 (-) | 645 | WP_001188318.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| GPW74_RS11230 | ssb | 2461336..2461869 (+) | 534 | WP_000168287.1 | single-stranded DNA-binding protein | Machinery gene |
| GPW74_RS11235 | csrD | 2462047..2464004 (+) | 1958 | Protein_2126 | RNase E specificity factor CsrD | - |
| GPW74_RS11240 | - | 2464017..2465456 (+) | 1440 | WP_059260585.1 | PilN domain-containing protein | - |
| GPW74_RS11245 | gspM | 2465453..2466103 (+) | 651 | WP_000835144.1 | type II secretion system protein GspM | - |
| GPW74_RS11250 | - | 2466096..2466413 (+) | 318 | WP_001887862.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19644.85 Da Isoelectric Point: 5.7626
>NTDB_id=406876 GPW74_RS11230 WP_000168287.1 2461336..2461869(+) (ssb) [Vibrio cholerae strain 2015V-1126]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=406876 GPW74_RS11230 WP_000168287.1 2461336..2461869(+) (ssb) [Vibrio cholerae strain 2015V-1126]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTCACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGTAGTTGGGGACAACCACAGCAACCAGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTCACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGTAGTTGGGGACAACCACAGCAACCAGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
99.435 |
100 |
0.994 |
| ssb | Glaesserella parasuis strain SC1401 |
52.198 |
100 |
0.537 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
47.778 |
100 |
0.486 |