Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPW74_RS11225 Genome accession   NZ_CP046737
Coordinates   2460400..2461044 (-) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain 2015V-1126     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2455400..2466044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW74_RS11215 uvrA 2456377..2459199 (-) 2823 WP_085603441.1 excinuclease ABC subunit UvrA -
  GPW74_RS11220 galU 2459355..2460227 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPW74_RS11225 qstR 2460400..2461044 (-) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPW74_RS11230 ssb 2461336..2461869 (+) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  GPW74_RS11235 csrD 2462047..2464004 (+) 1958 Protein_2126 RNase E specificity factor CsrD -
  GPW74_RS11240 - 2464017..2465456 (+) 1440 WP_059260585.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=406875 GPW74_RS11225 WP_001188318.1 2460400..2461044(-) (qstR) [Vibrio cholerae strain 2015V-1126]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=406875 GPW74_RS11225 WP_001188318.1 2460400..2461044(-) (qstR) [Vibrio cholerae strain 2015V-1126]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519

Multiple sequence alignment