Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPW74_RS09605 Genome accession   NZ_CP046737
Coordinates   2124897..2126420 (-) Length   507 a.a.
NCBI ID   WP_001887413.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2015V-1126     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2119897..2131420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW74_RS09580 - 2120088..2120354 (+) 267 WP_000649655.1 DUF1040 family protein -
  GPW74_RS09585 ccoG 2120755..2122179 (+) 1425 WP_000076153.1 cytochrome c oxidase accessory protein CcoG -
  GPW74_RS09590 - 2122227..2123213 (+) 987 WP_000189620.1 serine/threonine protein kinase -
  GPW74_RS09595 - 2123244..2123846 (+) 603 WP_000732282.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPW74_RS09600 - 2123923..2124807 (-) 885 WP_123012569.1 acyltransferase -
  GPW74_RS09605 comM 2124897..2126420 (-) 1524 WP_001887413.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPW74_RS09610 ilvG 2126954..2128600 (+) 1647 WP_000145260.1 acetolactate synthase 2 catalytic subunit -
  GPW74_RS09615 ilvM 2128612..2128896 (+) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  GPW74_RS09620 ilvE 2128908..2129846 (+) 939 WP_000201999.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55047.13 Da        Isoelectric Point: 8.3602

>NTDB_id=406871 GPW74_RS09605 WP_001887413.1 2124897..2126420(-) (comM) [Vibrio cholerae strain 2015V-1126]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARNKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSQARDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=406871 GPW74_RS09605 WP_001887413.1 2124897..2126420(-) (comM) [Vibrio cholerae strain 2015V-1126]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTGGTAGGATTGCCAGAAACTACAGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCGAAGCGCATTACGGTCAATTTAGCGCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAAATAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAAGGGGTTTTGCCTGCCGCGCTCGCGGCTAACCAAGTGGAGC
GCTGTTTGGTGGTGCCGCACAGTAATGGCGATCAGGCGGCTTTGGTCGGGGTTGAGCGGCATAAGTCGGCGCAAAGCTTA
CTCGAAGTGTGCGCAGACTTGTGTGGTCAGCAAACTCTATCTTTGTTTCAAAGTTCGCCCAGTGTGCAACAAGTAAGTCA
GGCGCGCGATCTGCAAGACATCATAGGTCAGCAGCAGGGAAAACGAGCTTTGGAAATCGCTGCGGCTGGCAATCACAACC
TATTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCAATGGAAACAGCCTCGATTGCCTCTCTTACGCAGCAAGAGATTAACCAACACAACTGGAAGTTACGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTAGTCGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTCTCG
CCCATAATGGTTTACTGTTTTTGGACGAAATGCCAGAGTTTGAGCGTAAAGTGCTTGATTCACTGCGTGAACCGCTGGAA
TCGGGTGAGATCGTGATTTCGCGCGCGCAGGGAAAAACCCGTTTTCCAGCACGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCGCGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTTCAG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCAGCGTTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTCTAGAAAGCGCGCTGCATC
GCTTGGGTTTATCAATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAAAACGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.803

100

0.998
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

64.147

100

0.653
  comM Legionella pneumophila str. Paris

50.806

97.83

0.497
  comM Legionella pneumophila strain ERS1305867

50.806

97.83

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.222

100

0.434

Multiple sequence alignment