Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPW66_RS07475 Genome accession   NZ_CP046736
Coordinates   586330..587853 (+) Length   507 a.a.
NCBI ID   WP_001887413.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3528-08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 581330..592853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW66_RS07460 ilvE 582903..583841 (-) 939 WP_000201999.1 branched-chain-amino-acid transaminase -
  GPW66_RS07465 ilvM 583853..584137 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  GPW66_RS07470 ilvG 584149..585795 (-) 1647 WP_001887412.1 acetolactate synthase 2 catalytic subunit -
  GPW66_RS07475 comM 586330..587853 (+) 1524 WP_001887413.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPW66_RS07480 - 587943..588827 (+) 885 WP_001887415.1 acyltransferase -
  GPW66_RS07485 - 588904..589506 (-) 603 WP_019829586.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPW66_RS07490 - 589537..590523 (-) 987 WP_000189620.1 serine/threonine protein kinase -
  GPW66_RS07495 ccoG 590571..591995 (-) 1425 WP_000076153.1 cytochrome c oxidase accessory protein CcoG -
  GPW66_RS07500 - 592395..592661 (-) 267 WP_000649654.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55047.13 Da        Isoelectric Point: 8.3602

>NTDB_id=406822 GPW66_RS07475 WP_001887413.1 586330..587853(+) (comM) [Vibrio cholerae strain 3528-08]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARNKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSQARDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=406822 GPW66_RS07475 WP_001887413.1 586330..587853(+) (comM) [Vibrio cholerae strain 3528-08]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTGGTAGGATTGCCAGAAACTACAGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCGAAGCGCATTACGGTCAATTTAGCGCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAAATAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAAGGGGTTTTGCCTGCCGCGCTCGCGGCTAACCAAGTGGAGC
GCTGTTTGGTGGTGCCGCACAGTAATGGCGATCAGGCGGCTTTGGTTGGGGTTGAGCGGCATAAGTCGGCGCAAAGCTTA
CTCGAAGTGTGCGCGGACTTGTGTGGTCAGCAAACTCTATCTTTGTTTCAAAGTTCGCCCAGTGTGCAACAAGTGAGTCA
GGCGCGCGATCTGCAAGACATCATAGGTCAGCAGCAGGGAAAACGAGCTTTAGAAATCGCTGCGGCTGGCAATCACAACC
TGCTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCAATGGAAACAGCCTCGATTGCCTCTCTTACGCAGCAAGAAATTAACCAACACAACTGGAAGTTACGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTAGTCGGGGGCGGCACCATTCCACGCCCCGGTGAAATTTCTCTCG
CCCATAATGGGTTACTATTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGCTTGATTCACTGCGTGAACCGCTGGAA
TCGGGTGAGATCGTGATTTCGCGCGCGCAGGGGAAAACCCGTTTTCCTGCACGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCGCGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTTCGG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCTGCGTTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTCTAGAAAGCGCGCTGCATC
GCTTGGGTTTATCTATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAGAACGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.803

100

0.998
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

64.147

100

0.653
  comM Legionella pneumophila str. Paris

50.806

97.83

0.497
  comM Legionella pneumophila strain ERS1305867

50.806

97.83

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.222

100

0.434

Multiple sequence alignment