Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GJB62_RS10505 Genome accession   NZ_CP046703
Coordinates   2557258..2557623 (-) Length   121 a.a.
NCBI ID   WP_069073698.1    Uniprot ID   A0A2D0HCN5
Organism   Nostoc sp. ATCC 53789     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2552258..2562623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJB62_RS10495 (GJB62_10415) - 2553769..2556699 (-) 2931 WP_114083827.1 methyl-accepting chemotaxis protein -
  GJB62_RS10500 (GJB62_10420) - 2556714..2557244 (-) 531 WP_114083801.1 chemotaxis protein CheW -
  GJB62_RS10505 (GJB62_10425) pilH 2557258..2557623 (-) 366 WP_069073698.1 response regulator Machinery gene
  GJB62_RS10510 (GJB62_10430) - 2557837..2559033 (-) 1197 WP_114083800.1 response regulator -
  GJB62_RS10515 (GJB62_10435) hmpF 2559443..2561203 (+) 1761 WP_114083799.1 pilus motility taxis protein HmpF -
  GJB62_RS10520 (GJB62_10440) tilS 2561332..2562327 (-) 996 WP_114083798.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13350.52 Da        Isoelectric Point: 4.8604

>NTDB_id=406672 GJB62_RS10505 WP_069073698.1 2557258..2557623(-) (pilH) [Nostoc sp. ATCC 53789]
MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQIAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=406672 GJB62_RS10505 WP_069073698.1 2557258..2557623(-) (pilH) [Nostoc sp. ATCC 53789]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCGCAAAGGGAGATGATTACAGACCTCCTAAAAGCAACTGGCCTAAC
AGTTACCCATGCCAGCGATGGATTAGAAGCATTGGAGGCAATCCAAATAGCACCTCCCGATTTAGTGGTGTTAGATATTG
TCATGCCCCGGATGAACGGCTACGAAGTTTGTCGGCGGTTAAAATCCGATCCCAAAACCCAAAATGTCCCGGTGGTGATG
TGTTCTTCCAAAGGCGAAGAATTTGATCGCTACTGGGGCATGAAGCAGGGTGCAGATGCCTACATAGCCAAACCGTTTCA
ACCAACCGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D0HCN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment