Detailed information    

insolico Bioinformatically predicted

Overview

Name   pknB   Type   Regulator
Locus tag   GPA00_RS05275 Genome accession   NZ_CP046629
Coordinates   1044251..1046137 (+) Length   628 a.a.
NCBI ID   WP_157327764.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   modulate the activity of ComDE; modulate the activity of VicKR (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039251..1051137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS05260 (GPA00_05260) fmt 1041229..1042164 (+) 936 WP_024344647.1 methionyl-tRNA formyltransferase -
  GPA00_RS05265 (GPA00_05265) rsmB 1042154..1043476 (+) 1323 WP_157327762.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GPA00_RS05270 (GPA00_05270) - 1043514..1044251 (+) 738 WP_024344649.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  GPA00_RS05275 (GPA00_05275) pknB 1044251..1046137 (+) 1887 WP_157327764.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  GPA00_RS05280 (GPA00_05280) liaF 1046235..1046930 (+) 696 WP_027968110.1 cell wall-active antibiotics response protein LiaF -
  GPA00_RS05285 (GPA00_05285) - 1046927..1047952 (+) 1026 WP_157327766.1 sensor histidine kinase -
  GPA00_RS05290 (GPA00_05290) - 1047936..1048580 (+) 645 WP_024344653.1 response regulator transcription factor -
  GPA00_RS05295 (GPA00_05295) - 1048704..1050104 (+) 1401 WP_029876003.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  GPA00_RS05300 (GPA00_05300) - 1050104..1050460 (+) 357 WP_027968108.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 628 a.a.        Molecular weight: 68543.24 Da        Isoelectric Point: 5.9292

>NTDB_id=406307 GPA00_RS05275 WP_157327764.1 1044251..1046137(+) (pknB) [Streptococcus equinus strain CNU G6]
MIQIGKLFAGRYRILKSIGRGGMADVYLAKDLILDNEEVAIKVLRTNYQTDQIAVARFQREARAMAELNHPNIVSIRDIG
EEDGQQFLVMEYVDGSDLKKYIQDHAPLSNNEVVRIMEEVLSAMTLAHQQGIVHRDLKPQNILLTKDGTVKVTDFGIAVA
FAETSLTQTNSMLGSVHYLSPEQARGSKATVQSDIYAMGIMLFEMLTGHIPYDGDSAVTIALQHFQKPLPSIIDENKNVP
QALENVVIKATAKRLSDRYASTFEMSRDLMTALSYNRSRERKLVFEDTENTKTLPKVTTSTPVPSTTEQLLKKQKAAKEN
KEVANQKAPKAKAKKKKSHRMFGTLMKIFFAVVVVAIAIFTYLTLSTPASVNVPDVSGAALSDAKTSLTSAGFKVGKIKE
IYSDTVPSGQVIETNPKAGTSKKEGSRVDIYVSSSELDDYTGQNYQEVIKKLGDKYGISNSAITIHWNDETSQKGGTVIS
QTPEKGTKVGSKSEVTLTVAAYTMPNLIGYTYQDAIAELTNLGILKSDITIYQADINSSSEYSQVKTPSASSVVVAQEPY
FGAAFKGSVKLYFSSESVSSSYETVPSQSIPEESESSETSETSESSSSSSSSSSTEESSQTDSSSVEQ

Nucleotide


Download         Length: 1887 bp        

>NTDB_id=406307 GPA00_RS05275 WP_157327764.1 1044251..1046137(+) (pknB) [Streptococcus equinus strain CNU G6]
ATGATTCAGATTGGCAAATTATTTGCTGGTCGTTATCGTATCCTTAAATCAATCGGACGGGGTGGAATGGCAGATGTTTA
TCTTGCCAAAGATCTGATTCTTGATAATGAAGAAGTAGCTATCAAAGTTCTTCGGACTAATTATCAAACAGATCAAATTG
CCGTAGCTCGTTTCCAACGTGAAGCGCGCGCCATGGCAGAGTTGAACCATCCCAATATTGTTTCGATTCGAGATATTGGA
GAAGAAGACGGACAGCAATTCTTAGTAATGGAATATGTTGATGGTTCTGACTTGAAAAAATACATTCAAGATCATGCGCC
TCTATCTAATAACGAAGTTGTTAGAATTATGGAAGAAGTCTTGTCAGCAATGACTCTTGCCCATCAACAAGGAATTGTTC
ACCGTGACTTAAAACCACAAAATATTTTGTTGACTAAAGACGGAACTGTAAAAGTTACTGACTTTGGTATTGCTGTAGCT
TTTGCAGAAACAAGTTTAACACAGACAAACTCAATGCTTGGTAGTGTGCATTATTTGTCACCTGAACAAGCGCGCGGTTC
AAAAGCCACTGTTCAAAGTGATATCTATGCTATGGGGATTATGTTGTTTGAAATGTTAACAGGTCACATTCCTTATGATG
GGGATTCAGCTGTTACGATTGCTTTGCAACATTTCCAAAAACCACTTCCATCAATCATTGATGAAAACAAAAATGTTCCT
CAAGCTTTGGAAAATGTAGTTATCAAAGCAACAGCAAAACGTTTAAGCGACCGTTATGCATCAACGTTTGAAATGAGTCG
TGATTTGATGACGGCACTTTCATACAACCGTAGTCGAGAACGTAAACTTGTTTTTGAGGATACAGAAAATACTAAGACAC
TTCCAAAAGTGACTACTTCAACACCTGTTCCATCAACGACAGAACAATTGTTGAAAAAACAAAAAGCTGCAAAAGAAAAT
AAAGAAGTAGCTAATCAAAAAGCACCTAAAGCAAAGGCTAAAAAGAAAAAATCTCATCGTATGTTTGGTACTTTGATGAA
AATCTTCTTTGCAGTCGTTGTTGTTGCGATTGCTATCTTTACTTACTTAACTTTAAGTACACCAGCTTCAGTTAATGTTC
CAGATGTATCTGGTGCGGCTTTATCTGATGCTAAGACAAGTCTTACATCAGCAGGGTTTAAAGTTGGAAAGATCAAGGAA
ATTTATAGTGATACTGTTCCAAGTGGTCAGGTTATTGAGACTAATCCGAAAGCTGGCACATCTAAGAAAGAAGGGTCTAG
AGTTGATATCTATGTTTCAAGTTCTGAGTTGGATGATTATACTGGTCAAAATTATCAAGAAGTTATTAAAAAACTTGGAG
ACAAATATGGTATCTCAAATAGTGCTATTACGATTCATTGGAACGACGAAACTAGTCAGAAAGGTGGTACTGTTATTAGT
CAAACCCCTGAAAAGGGGACAAAAGTTGGTAGCAAGAGTGAAGTTACTTTAACGGTTGCGGCTTATACTATGCCTAATCT
GATTGGTTACACTTATCAAGATGCTATTGCTGAATTGACGAATCTTGGAATACTAAAATCTGATATCACAATATATCAAG
CAGATATCAATTCTTCATCAGAATATTCTCAAGTTAAAACGCCATCTGCATCGTCAGTTGTTGTGGCACAAGAACCTTAC
TTTGGTGCAGCTTTTAAAGGAAGCGTGAAACTTTATTTTTCATCTGAAAGTGTTTCTTCTTCTTATGAAACAGTACCTTC
CCAATCTATTCCTGAAGAGTCTGAGTCATCTGAGACAAGTGAAACTAGTGAGTCAAGTTCTTCAAGTAGCAGCAGTAGCA
GCACTGAAGAAAGTTCACAAACCGACTCATCATCAGTTGAACAATAA

Domains

Predicted by InterproScan.

Protein kinase domain (Pkinase)

(12-247)

PASTA domain (PASTA)

(503-574)

PASTA domain (PASTA)

(371-433)

PASTA domain (PASTA)

(436-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pknB Streptococcus mutans UA159

65.845

90.446

0.596
  stkP/pknB Streptococcus salivarius strain HSISS4

62.988

93.79

0.591
  stkP Streptococcus pneumoniae TIGR4

58.004

84.554

0.49
  stkP Streptococcus pneumoniae D39

57.815

84.554

0.489
  stkP Streptococcus pneumoniae R6

57.815

84.554

0.489
  stkP Streptococcus pneumoniae Rx1

57.627

84.554

0.487

Multiple sequence alignment