Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   GPA00_RS02035 Genome accession   NZ_CP046629
Coordinates   406266..407639 (-) Length   457 a.a.
NCBI ID   WP_157327331.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 401266..412639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS02010 (GPA00_02010) rpe 401699..402361 (-) 663 WP_024343526.1 ribulose-phosphate 3-epimerase -
  GPA00_RS02015 (GPA00_02015) rsgA 402368..403240 (-) 873 WP_027968346.1 ribosome small subunit-dependent GTPase A -
  GPA00_RS02025 (GPA00_02025) comE/comE2 403532..404260 (-) 729 WP_033153377.1 LytR/AlgR family response regulator transcription factor Regulator
  GPA00_RS02030 (GPA00_02030) comD/comD3 404880..405893 (-) 1014 WP_232524224.1 sensor histidine kinase Regulator
  GPA00_RS02035 (GPA00_02035) comD/comD3 406266..407639 (-) 1374 WP_157327331.1 GHKL domain-containing protein Regulator
  GPA00_RS02040 (GPA00_02040) - 408003..408296 (-) 294 WP_157327332.1 bacteriocin immunity protein -
  GPA00_RS02045 (GPA00_02045) - 408324..408629 (-) 306 WP_157327334.1 bacteriocin immunity protein -
  GPA00_RS02050 (GPA00_02050) - 408642..408791 (-) 150 WP_157327336.1 bacteriocin -
  GPA00_RS02055 (GPA00_02055) comC/comC1 409053..409205 (+) 153 WP_157327338.1 hypothetical protein Regulator
  GPA00_RS02060 (GPA00_02060) - 409228..410553 (-) 1326 WP_157327340.1 sensor histidine kinase -
  GPA00_RS02065 (GPA00_02065) comE/comE1 410558..411289 (-) 732 WP_157327342.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 52641.19 Da        Isoelectric Point: 5.3191

>NTDB_id=406277 GPA00_RS02035 WP_157327331.1 406266..407639(-) (comD/comD3) [Streptococcus equinus strain CNU G6]
MLGNLTLFFAFIVNFISFVLLGLLFQQITKYKLSLKEWIFFLFEVEVLLPIVNGIFLSTLNLNPYLVKEVTIYLVVLYLI
IISYKRDSKIEFRYHFFYGLYPIAFYIVLHNSFFIICQSIFSIKINLTNPSLVVVLSGAEPFIVYYLVSRWLNIDISNVS
QSLKKHIEPKIFNIINILMVSYFLFMDAIAIVKPFHNADNDAIRGIVAFIYLILLFVFLFYLNFRHGQEQKNELLRNQEM
ELAALENYSKHVESLYQEVRSFRHDYANVLMSLKVGIDQGNLDDIKKIYDEITADSTKLVKNNKFDLTRLANITDSGVKS
LMSAKFLQAENQGIAISLEVAEEMGTPKIPLISYIRILSILFDNAIEGALESENPKIAVANFYQDGDFVLIIENSTREKS
VDLSKIFQRGYSTKGENRGLGLATLVDFQDDYENLSVETSSLDYKFTQVVRVYEGEN

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=406277 GPA00_RS02035 WP_157327331.1 406266..407639(-) (comD/comD3) [Streptococcus equinus strain CNU G6]
ATGTTGGGTAATTTAACGCTATTTTTTGCTTTTATTGTTAATTTTATAAGTTTTGTTCTACTAGGATTATTATTTCAACA
AATTACTAAATATAAATTATCTTTAAAGGAATGGATTTTCTTTTTGTTTGAGGTCGAAGTCTTATTACCGATAGTGAATG
GTATTTTTCTCAGTACACTAAATTTAAATCCTTATCTGGTTAAAGAAGTTACTATTTATTTAGTTGTATTATATCTTATT
ATTATTTCTTATAAGCGTGATTCTAAAATAGAATTTAGATACCATTTCTTTTACGGCTTATATCCTATTGCATTCTATAT
TGTTTTGCACAATTCTTTCTTCATTATTTGCCAATCTATTTTTTCAATAAAGATAAACCTTACAAATCCATCATTGGTGG
TCGTATTATCGGGAGCTGAACCATTTATTGTGTATTATTTAGTTTCACGATGGTTAAATATTGATATTTCAAATGTAAGT
CAAAGTTTAAAAAAACACATCGAGCCAAAAATTTTTAATATTATTAATATCTTGATGGTCTCTTATTTTTTATTCATGGA
TGCCATTGCTATTGTAAAACCTTTTCATAATGCTGATAACGATGCAATAAGGGGAATTGTTGCTTTCATTTATCTCATCC
TTCTTTTCGTCTTCCTCTTTTATCTCAATTTCCGTCATGGGCAAGAGCAGAAAAATGAATTGCTTCGCAATCAGGAGATG
GAGCTTGCAGCACTTGAAAATTATAGCAAGCACGTGGAAAGTTTATATCAAGAAGTTCGCAGTTTTCGTCATGACTATGC
TAATGTCTTAATGAGTTTGAAGGTTGGAATTGACCAAGGCAATCTGGATGACATCAAGAAAATTTACGACGAAATCACGG
CCGATTCGACGAAACTAGTCAAAAATAATAAATTTGACTTGACTCGTCTTGCTAACATCACAGATAGCGGCGTCAAAAGT
CTGATGTCTGCTAAATTTTTGCAGGCGGAAAATCAAGGAATTGCAATTAGCCTAGAAGTCGCCGAAGAAATGGGAACTCC
GAAGATTCCATTGATTTCCTATATTCGAATTTTGTCGATTCTGTTTGATAATGCCATCGAAGGAGCTTTAGAGTCAGAAA
ATCCCAAAATTGCAGTAGCGAATTTTTACCAAGATGGAGATTTTGTGTTGATCATTGAAAATTCGACTAGGGAAAAATCT
GTAGATTTATCCAAAATTTTCCAACGCGGTTACTCAACAAAAGGTGAGAATCGCGGTCTGGGTCTTGCAACATTGGTTGA
TTTTCAGGATGATTACGAGAATTTGTCAGTTGAAACCAGCAGTCTCGATTACAAATTTACACAAGTTGTGAGAGTTTATG
AGGGGGAGAATTAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(355-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

65.708

98.906

0.65
  comD/comD2 Streptococcus equinus JB1

91.401

68.709

0.628

Multiple sequence alignment