Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC/comC1   Type   Regulator
Locus tag   GPA00_RS02055 Genome accession   NZ_CP046629
Coordinates   409053..409205 (+) Length   50 a.a.
NCBI ID   WP_157327338.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   binding to ComD; induce autophosphorylation of ComD (predicted from homology)   
Competence regulation

Genomic Context

Location: 404053..414205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS02030 (GPA00_02030) comD/comD3 404880..405893 (-) 1014 WP_232524224.1 sensor histidine kinase Regulator
  GPA00_RS02035 (GPA00_02035) comD/comD3 406266..407639 (-) 1374 WP_157327331.1 GHKL domain-containing protein Regulator
  GPA00_RS02040 (GPA00_02040) - 408003..408296 (-) 294 WP_157327332.1 bacteriocin immunity protein -
  GPA00_RS02045 (GPA00_02045) - 408324..408629 (-) 306 WP_157327334.1 bacteriocin immunity protein -
  GPA00_RS02050 (GPA00_02050) - 408642..408791 (-) 150 WP_157327336.1 bacteriocin -
  GPA00_RS02055 (GPA00_02055) comC/comC1 409053..409205 (+) 153 WP_157327338.1 hypothetical protein Regulator
  GPA00_RS02060 (GPA00_02060) - 409228..410553 (-) 1326 WP_157327340.1 sensor histidine kinase -
  GPA00_RS02065 (GPA00_02065) comE/comE1 410558..411289 (-) 732 WP_157327342.1 response regulator transcription factor Regulator
  GPA00_RS02070 (GPA00_02070) - 412319..413611 (-) 1293 WP_157327344.1 glycosyltransferase family 2 protein -
  GPA00_RS02075 (GPA00_02075) - 413614..413913 (-) 300 WP_157327346.1 DUF3884 family protein -
  GPA00_RS02080 (GPA00_02080) - 413939..414121 (-) 183 WP_157327348.1 hypothetical protein -

Sequence

Protein


Download         Length: 50 a.a.        Molecular weight: 5625.47 Da        Isoelectric Point: 4.9306

>NTDB_id=406278 GPA00_RS02055 WP_157327338.1 409053..409205(+) (comC/comC1) [Streptococcus equinus strain CNU G6]
MTEWKMSELESVKELTDSDLEKTVGGDNIPLLTGVGDLFKIFKGKNKNHM

Nucleotide


Download         Length: 153 bp        

>NTDB_id=406278 GPA00_RS02055 WP_157327338.1 409053..409205(+) (comC/comC1) [Streptococcus equinus strain CNU G6]
ATGACAGAATGGAAAATGTCAGAGTTAGAATCAGTCAAAGAATTGACTGATTCTGATTTGGAGAAGACAGTTGGAGGGGA
TAATATTCCTCTACTTACTGGTGTTGGTGATTTATTTAAAATTTTTAAAGGAAAAAATAAAAATCACATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC/comC1 Streptococcus equinus JB1

77.551

98

0.76

Multiple sequence alignment