Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   UMN179_RS07980 Genome accession   NC_015460
Coordinates   1714414..1714743 (+) Length   109 a.a.
NCBI ID   WP_013746361.1    Uniprot ID   F4HBV2
Organism   Gallibacterium anatis UMN179     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1709414..1719743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMN179_RS07965 (UMN179_01570) galU 1710251..1711138 (+) 888 WP_013746358.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  UMN179_RS07970 (UMN179_01571) glpT 1711498..1712955 (+) 1458 WP_013746359.1 glycerol-3-phosphate transporter -
  UMN179_RS07975 (UMN179_01572) glpQ 1713146..1714240 (+) 1095 WP_013746360.1 glycerophosphodiester phosphodiesterase -
  UMN179_RS07980 (UMN179_01573) comEA/comE1 1714414..1714743 (+) 330 WP_013746361.1 ComEA family DNA-binding protein Machinery gene
  UMN179_RS07985 (UMN179_01574) fis 1714825..1715121 (-) 297 WP_013746362.1 DNA-binding transcriptional regulator Fis -
  UMN179_RS07990 (UMN179_01575) dusB 1715150..1716124 (-) 975 WP_013746363.1 tRNA dihydrouridine synthase DusB -
  UMN179_RS07995 (UMN179_01577) - 1716451..1719489 (+) 3039 WP_013746365.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11558.21 Da        Isoelectric Point: 7.2030

>NTDB_id=40622 UMN179_RS07980 WP_013746361.1 1714414..1714743(+) (comEA/comE1) [Gallibacterium anatis UMN179]
MKLKHLFALTFGSLALLSGSVAVAESANPPPATETAQLQQAAQSDKVNLNTATAEQLQKGLVGIGAKKAQAIVEYREQHG
PFVSVEQITEVKGIGSAIFEKNKDRLAIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=40622 UMN179_RS07980 WP_013746361.1 1714414..1714743(+) (comEA/comE1) [Gallibacterium anatis UMN179]
ATGAAATTAAAACATTTATTTGCGTTAACTTTCGGTTCACTAGCACTGTTGTCCGGTTCGGTTGCGGTAGCGGAAAGCGC
CAATCCGCCGCCGGCAACTGAAACGGCACAACTCCAACAGGCGGCACAGAGCGATAAAGTGAATTTAAATACTGCCACTG
CTGAACAGTTACAGAAAGGATTGGTCGGTATTGGTGCGAAAAAGGCACAGGCGATTGTCGAGTATCGTGAGCAGCACGGG
CCGTTTGTTTCTGTGGAACAGATTACCGAAGTAAAAGGAATCGGTTCAGCTATTTTTGAAAAAAATAAAGATCGTCTAGC
GATTGAATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4HBV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

48.649

100

0.495
  comE1/comEA Haemophilus influenzae Rd KW20

48.182

100

0.486
  comEA Acinetobacter baylyi ADP1

39.535

100

0.468
  comEA Bacillus subtilis subsp. subtilis str. 168

46.067

81.651

0.376

Multiple sequence alignment