Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   UMN179_RS06845 Genome accession   NC_015460
Coordinates   1459291..1460829 (-) Length   512 a.a.
NCBI ID   WP_013746140.1    Uniprot ID   F4HAJ2
Organism   Gallibacterium anatis UMN179     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1454291..1465829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMN179_RS12890 - 1455015..1455119 (+) 105 Protein_1328 sulfurtransferase TusA family protein -
  UMN179_RS13205 - 1455424..1455573 (+) 150 WP_158305795.1 hypothetical protein -
  UMN179_RS06835 (UMN179_01344) - 1455673..1456179 (+) 507 WP_013745596.1 hypothetical protein -
  UMN179_RS06840 (UMN179_01346) - 1456074..1459106 (+) 3033 WP_043885272.1 GA-like domain-containing protein -
  UMN179_RS06845 (UMN179_01347) comM 1459291..1460829 (-) 1539 WP_013746140.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  UMN179_RS06850 (UMN179_01348) lipA 1460974..1461936 (-) 963 WP_013746141.1 lipoyl synthase -
  UMN179_RS06855 (UMN179_01349) lipB 1461946..1462674 (-) 729 WP_013746142.1 lipoyl(octanoyl) transferase LipB -
  UMN179_RS06860 (UMN179_01350) ybeD 1462688..1462963 (-) 276 WP_026211015.1 DUF493 family protein YbeD -
  UMN179_RS06865 (UMN179_01351) - 1463101..1464285 (-) 1185 WP_013746144.1 serine hydrolase -
  UMN179_RS06870 (UMN179_01352) - 1464308..1465144 (-) 837 WP_013746145.1 septal ring lytic transglycosylase RlpA family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 56234.95 Da        Isoelectric Point: 9.6867

>NTDB_id=40619 UMN179_RS06845 WP_013746140.1 1459291..1460829(-) (comM) [Gallibacterium anatis UMN179]
MSLAVVYSRASIGVQAPLITIEVHMSNGAPGLTLVGLPETTVKEARDRVRSALINANFVYPTQRITINLAPADLPKEGGR
FDLPIALGILAASGQIDAKRLQSFEFVGELALTGNLRGVQGVIPAILAANNAKRELIIAKQNAQEATLVANTQTYFADSL
LDVVSFLNQQQKLPIAQQLPPLSHSKNPHLLDMTDIIGQQHAKRALLIAAAGQHNLLFLGPPGTGKTMLASRLTTLLPEM
TEQEAIETAAINSLVQRCVDYQHWKQRPFRSPHHSASMAALVGGGTIPKPGEISLAHNGVLFLDELPEFDRKVLDALREP
LESGEIIISRTAAKVTFPAKFQLIAAMNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQQLP
KDENNSEKLKHIVIQARKKQLSRCGKINAHLSGKEIEQYCKLIQDDAIFLENALNKLGLSVRAYHRILRVSRTIADLAGE
EQIQRIHLAEALGYRAMDRLLQRLTANINNTI

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=40619 UMN179_RS06845 WP_013746140.1 1459291..1460829(-) (comM) [Gallibacterium anatis UMN179]
ATGTCATTAGCAGTTGTTTACAGCCGTGCCTCTATCGGCGTACAAGCACCATTAATCACAATTGAAGTCCATATGAGTAA
CGGCGCACCGGGATTAACTTTGGTTGGGCTACCAGAAACAACAGTAAAAGAAGCCCGAGATCGTGTCCGCAGTGCATTAA
TCAATGCTAATTTTGTCTATCCGACACAACGCATTACCATCAATCTGGCACCGGCGGATCTACCGAAAGAGGGCGGGCGC
TTTGATCTTCCCATCGCCTTAGGCATTTTGGCAGCTTCCGGGCAAATCGATGCTAAGCGGTTACAATCTTTCGAATTTGT
CGGTGAACTGGCACTTACCGGAAATTTACGTGGCGTACAAGGCGTTATTCCGGCTATTTTGGCGGCGAATAACGCAAAAC
GTGAATTAATTATTGCTAAACAGAACGCACAAGAAGCAACATTAGTTGCCAACACACAAACCTATTTTGCCGACTCGCTA
TTAGATGTTGTCAGTTTTTTGAATCAGCAACAAAAATTGCCGATAGCACAACAATTACCGCCACTATCCCATTCTAAAAA
CCCCCATTTACTGGATATGACCGATATTATCGGACAACAACACGCTAAACGAGCTTTACTCATTGCTGCTGCCGGACAGC
ATAATCTCCTCTTTTTAGGGCCACCCGGTACAGGCAAAACTATGTTGGCAAGTCGATTAACAACACTATTGCCAGAGATG
ACAGAACAAGAAGCGATTGAAACGGCTGCCATTAATAGCTTAGTACAACGTTGTGTGGATTATCAGCATTGGAAACAACG
CCCATTCCGCTCACCACATCACAGTGCCTCAATGGCGGCGTTAGTTGGTGGTGGCACTATTCCTAAACCGGGAGAAATTT
CTCTTGCTCATAATGGTGTACTTTTTTTAGATGAATTACCGGAATTTGATCGAAAAGTGCTTGATGCCTTGCGAGAGCCA
TTAGAGAGTGGCGAAATTATTATCTCTCGTACGGCAGCTAAAGTTACCTTTCCAGCAAAATTTCAACTGATCGCTGCAAT
GAACCCTAGCCCAACAGGGCATTATCAAGGCACACATAACCGCACATCTCCTCAACAAATTATGCGTTATCTCAACCGTC
TTTCTGGCCCTTTTTTAGATCGATTTGATCTCTCAATTGAAGTGCCATTACTGCCACAAGGTACTTTGCAACAATTACCT
AAAGACGAAAACAACAGTGAAAAATTAAAACATATCGTGATACAGGCGAGGAAAAAACAACTCTCTCGTTGCGGAAAAAT
TAATGCCCATTTATCTGGCAAAGAGATCGAACAATATTGCAAATTAATACAAGATGATGCCATTTTTCTTGAAAATGCAT
TGAATAAGTTGGGGCTTTCTGTTAGAGCCTATCATCGCATTTTACGAGTTTCTCGCACTATCGCCGATCTGGCAGGTGAA
GAACAAATCCAACGCATTCATCTAGCTGAAGCACTAGGTTATCGTGCTATGGACAGGTTATTACAGCGTTTAACCGCTAA
TATCAATAACACCATTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4HAJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

75.74

99.023

0.75
  comM Glaesserella parasuis strain SC1401

75.889

98.828

0.75
  comM Vibrio cholerae strain A1552

64.625

98.828

0.639
  comM Vibrio campbellii strain DS40M4

64.032

98.828

0.633
  comM Legionella pneumophila str. Paris

51.195

98.047

0.502
  comM Legionella pneumophila strain ERS1305867

51.195

98.047

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.575

99.805

0.465

Multiple sequence alignment