Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GO600_RS10865 Genome accession   NZ_CP046617
Coordinates   2049135..2050619 (+) Length   494 a.a.
NCBI ID   WP_028494729.1    Uniprot ID   -
Organism   Thermus antranikianii strain JCM 19900     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2044135..2055619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO600_RS10840 (GO600_10795) - 2044484..2044786 (-) 303 WP_028494724.1 proton-translocating transhydrogenase family protein -
  GO600_RS10845 (GO600_10800) - 2044786..2045913 (-) 1128 WP_028494725.1 NAD(P) transhydrogenase subunit alpha -
  GO600_RS10850 (GO600_10805) - 2046020..2046907 (+) 888 WP_028494726.1 DMT family transporter -
  GO600_RS10855 (GO600_10810) - 2046904..2047716 (+) 813 WP_028494727.1 EamA family transporter -
  GO600_RS10860 (GO600_10815) - 2047718..2048863 (+) 1146 WP_028494728.1 MFS transporter -
  GO600_RS10865 (GO600_10820) comM 2049135..2050619 (+) 1485 WP_028494729.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GO600_RS10870 (GO600_10825) mgsA 2050616..2050993 (-) 378 WP_028494730.1 methylglyoxal synthase -
  GO600_RS10875 (GO600_10830) - 2051017..2051343 (+) 327 WP_028494731.1 nucleotide pyrophosphohydrolase -
  GO600_RS10880 (GO600_10835) - 2051345..2051986 (+) 642 WP_245563408.1 ABC transporter permease -
  GO600_RS10885 (GO600_10840) - 2051976..2053052 (+) 1077 WP_028494732.1 YbfB/YjiJ family MFS transporter -
  GO600_RS10890 (GO600_10845) - 2053040..2054575 (-) 1536 WP_028494733.1 carboxypeptidase M32 -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52862.05 Da        Isoelectric Point: 7.8126

>NTDB_id=406070 GO600_RS10865 WP_028494729.1 2049135..2050619(+) (comM) [Thermus antranikianii strain JCM 19900]
MLAQVRSYTLFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNSGFPYPQARVVVNLAPAELRKEGSHF
DLPIALGLLAAQGVVPLEGLAGLAVAGELGLDGTLRPVPGAVNLALGALGEGKKLLLPLESAKEAALVEGVEVYGVENLL
QAVAYLRGEEEPRRVEPDDPVAALEALDLRDVKGQAKAKRALEIAAAGYHHLLMVGSPGSGKTMLARRLPFLLPPLSQEA
ALEVSRIHSAAGQILKGLVRTPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSRDALEALRQPLEDGV
VTVSRARASLTFPARFLLVAAMNPCPCGWYGDPERACTCTPASRQRYVGKISGPLLDRFDLVVEVPRLTPAELARAPEGE
GTEAVRERVLRARERMLARQGRPNGELAGKALREHVRLTSGAENLLQAAAKRMLLSARSYDRLLRVARTIADLQGAESVE
ENHVAEALAYRKTL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=406070 GO600_RS10865 WP_028494729.1 2049135..2050619(+) (comM) [Thermus antranikianii strain JCM 19900]
ATGCTAGCCCAGGTGCGAAGCTATACCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGATGTTAGCCCCGG
GCTTCCCAGCTACGCCCTGGTGGGGTTGCCGGACAAGGCGGTGGAGGAAAGCCGGGAGCGGGTCAGGGCCGCCCTAAAGA
ACTCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAACTCCGTAAGGAAGGAAGCCACTTT
GACCTGCCCATCGCCTTGGGGCTTCTGGCCGCCCAAGGGGTGGTGCCCCTGGAGGGCCTGGCGGGCCTGGCGGTGGCCGG
GGAGCTGGGCCTGGATGGAACCCTGCGCCCGGTGCCCGGGGCGGTGAACCTGGCTTTGGGGGCCTTGGGCGAAGGGAAAA
AGCTCCTCCTGCCCCTGGAAAGCGCCAAGGAGGCCGCCTTGGTGGAGGGGGTGGAGGTCTACGGGGTGGAAAACCTCCTT
CAGGCGGTGGCCTACCTGAGGGGAGAAGAGGAGCCCAGGAGGGTGGAGCCCGACGATCCCGTGGCCGCCCTGGAGGCTTT
GGACCTCCGGGACGTGAAGGGCCAGGCCAAGGCCAAAAGGGCCCTGGAGATCGCCGCCGCCGGTTACCACCACCTCCTTA
TGGTGGGAAGCCCGGGCTCGGGAAAAACTATGCTGGCTAGGCGCCTTCCCTTTCTGCTTCCCCCTTTGAGCCAGGAGGCC
GCCCTCGAGGTAAGCCGCATCCACTCCGCCGCCGGGCAGATCCTTAAGGGCCTGGTGCGCACGCCCCCCTTCCGCGCCCC
CCACCACACGGTGAGCTACGCGGGCCTCATCGGGGGCGGGGCCATCCCCAAGCCGGGGGAGGTTTCCCTGGCCCACCGGG
GGGTGCTTTTCCTGGACGAGTTCCCCGAGTTTTCCCGGGATGCCCTGGAAGCCCTCCGCCAGCCCCTCGAGGACGGGGTG
GTGACCGTCTCCCGGGCCAGGGCCAGCCTCACCTTCCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGTACGGGGACCCGGAGCGGGCCTGCACCTGCACCCCGGCAAGCCGCCAGCGCTACGTGGGGAAGATCTCCGGAC
CTCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCTTAACCCCAGCTGAGCTCGCCCGCGCCCCCGAAGGGGAA
GGCACCGAGGCCGTGCGGGAAAGGGTCCTAAGGGCCCGGGAGAGGATGCTCGCCCGGCAGGGCAGGCCCAACGGGGAGCT
TGCGGGAAAGGCCCTGAGGGAGCACGTACGCTTAACCTCGGGGGCGGAAAACCTCCTCCAGGCAGCGGCCAAGCGGATGC
TCCTTTCCGCCAGGAGCTACGACCGCCTCCTCCGGGTAGCCCGCACCATCGCCGACCTGCAGGGAGCGGAGAGCGTGGAG
GAAAACCACGTGGCCGAGGCCTTGGCCTACCGCAAGACCCTCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.687

100

0.488
  comM Haemophilus influenzae Rd KW20

46.386

100

0.468
  comM Glaesserella parasuis strain SC1401

45.984

100

0.464
  comM Vibrio campbellii strain DS40M4

46.154

100

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.462
  comM Legionella pneumophila str. Paris

45.473

100

0.457
  comM Legionella pneumophila strain ERS1305867

45.473

100

0.457

Multiple sequence alignment