Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GO600_RS02590 Genome accession   NZ_CP046617
Coordinates   445137..447401 (-) Length   754 a.a.
NCBI ID   WP_418954023.1    Uniprot ID   -
Organism   Thermus antranikianii strain JCM 19900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440137..452401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO600_RS02560 (GO600_02555) rsmF 440283..441650 (+) 1368 WP_028493418.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
  GO600_RS02565 (GO600_02560) - 441656..442051 (-) 396 WP_038050666.1 type II toxin-antitoxin system VapC family toxin -
  GO600_RS02570 (GO600_02565) - 442039..442266 (-) 228 WP_028493416.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  GO600_RS02575 (GO600_02570) - 442278..443333 (-) 1056 WP_028493415.1 3-dehydroquinate synthase -
  GO600_RS02580 (GO600_02575) - 443311..443865 (-) 555 WP_028493414.1 shikimate kinase -
  GO600_RS02585 (GO600_02580) aroC 443883..445034 (-) 1152 WP_028493413.1 chorismate synthase -
  GO600_RS02590 (GO600_02585) pilQ 445137..447401 (-) 2265 WP_418954023.1 secretin N-terminal domain-containing protein Machinery gene
  GO600_RS02595 pilW 447413..447589 (-) 177 WP_245563304.1 hypothetical protein Machinery gene
  GO600_RS02600 (GO600_02595) pilO 448381..449007 (-) 627 WP_028493410.1 type 4a pilus biogenesis protein PilO Machinery gene
  GO600_RS02605 (GO600_02600) pilN 448997..449620 (-) 624 WP_028493409.1 competence protein Machinery gene
  GO600_RS02610 (GO600_02605) pilM 449613..450746 (-) 1134 WP_028493408.1 type IV pilus assembly protein PilM Machinery gene
  GO600_RS02615 (GO600_02610) - 450938..451942 (-) 1005 WP_028493407.1 homoisocitrate dehydrogenase -

Sequence

Protein


Download         Length: 754 a.a.        Molecular weight: 82423.81 Da        Isoelectric Point: 6.0396

>NTDB_id=406056 GO600_RS02590 WP_418954023.1 445137..447401(-) (pilQ) [Thermus antranikianii strain JCM 19900]
MKLVIPGLLALGMGALAGSLPQEPRFDAKVDLKISENQVRAGFTLPLDVVLEALARSVGLQPLIYRAYDASGDPAKAQPP
LPNIKLDFQGKPFREVWDLLFATYGTQFNLDYLLLPPDVVVVAPTQVITALVDAPSRTGAMERKPYLVAIPEIAYRRTET
DAQGQVRTVVNIDGAKGWVQNDLLPFLSREASGLSVNWIVVEEGGRLRALLSVLATPEQHIRFSDILQRAGIDFRPLPAL
TLPKPRVERTYVVAHATFPEILAFLQGRVPGAQISVVPTDPKRALITATEEDHARIAELLKVADVPKPTPVVRRVYTLQN
LTFQEAQERLKPVLERELKGARLEGVPGNPKALLLEATEADQAFFAEILKAADVPPQVAPPTQEATVRRLYPLRFADAEK
VASFLAREVPGIVVQTVPGQPVLSVRGTEKQLSEVENLLAQIDRAPEQGPPILQRSYQLSNAKAADLAKVLQEALQARQA
QAPQGQARPQGPTRQATVVADERTNTLIVTGTQEDLALVEGLIPKLDQAVPQVNLRVRIQEVQSNFSRNLGLKWNTIAGG
NVAASILDTGLSLIFDSTRSLAALNIIATLEALQRQGLSRALRDVNQTVLNNQTARLQSGETFLIRRVVGDRVERVPFDI
GIIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVRDGQTVVLGGLTSQENNQVQQGVPLLMDI
PLIGELFKQRTQETTDRELLVVITADIVKETASR

Nucleotide


Download         Length: 2265 bp        

>NTDB_id=406056 GO600_RS02590 WP_418954023.1 445137..447401(-) (pilQ) [Thermus antranikianii strain JCM 19900]
ATGAAACTTGTGATCCCCGGCCTGTTGGCCCTCGGCATGGGGGCCCTAGCGGGAAGCCTTCCCCAGGAACCCCGCTTTGA
CGCCAAGGTGGACCTGAAGATTTCCGAAAACCAGGTGCGGGCCGGGTTCACCCTGCCCCTGGATGTGGTCCTGGAAGCCC
TGGCCCGGAGCGTGGGCCTCCAACCCCTCATCTACCGGGCCTACGATGCCTCCGGCGACCCGGCCAAGGCCCAGCCCCCC
TTACCCAACATCAAGTTGGACTTTCAGGGCAAACCCTTCCGGGAGGTCTGGGACCTCCTCTTCGCCACCTACGGTACCCA
GTTCAACCTGGACTACCTCCTACTGCCTCCCGACGTAGTGGTGGTGGCCCCCACCCAGGTGATCACGGCCTTGGTGGACG
CCCCAAGCCGCACCGGGGCCATGGAGCGGAAACCCTACCTGGTGGCCATCCCTGAGATCGCCTACCGGCGCACGGAAACC
GACGCCCAGGGTCAAGTTCGCACCGTGGTGAACATAGATGGGGCCAAGGGCTGGGTGCAAAACGATCTCCTGCCCTTCCT
TTCCCGGGAAGCCAGCGGGCTTAGCGTGAACTGGATTGTGGTAGAGGAAGGGGGCAGGCTCAGGGCCCTACTCTCTGTCC
TGGCCACCCCAGAACAGCACATTCGCTTCTCGGACATTCTCCAGCGGGCTGGGATTGACTTCCGCCCCTTACCTGCCCTC
ACCTTACCTAAACCGAGGGTTGAACGGACGTATGTGGTTGCCCATGCCACCTTCCCCGAGATTCTGGCTTTTTTGCAAGG
CCGGGTGCCGGGCGCACAAATCAGCGTGGTCCCTACAGATCCCAAACGGGCCCTCATCACCGCCACCGAGGAGGACCACG
CCCGCATCGCCGAACTCCTGAAGGTGGCCGACGTACCCAAGCCCACCCCCGTGGTGCGCCGGGTCTACACCTTGCAGAAC
CTCACTTTCCAGGAAGCCCAGGAAAGGCTTAAGCCCGTCCTGGAACGAGAGCTGAAAGGAGCCCGCTTGGAAGGCGTCCC
GGGTAATCCCAAAGCCCTTCTTCTGGAAGCTACCGAAGCTGACCAGGCTTTCTTCGCCGAGATCCTCAAGGCCGCTGATG
TACCCCCCCAGGTGGCCCCGCCCACCCAGGAGGCCACGGTGCGGAGGCTCTACCCCTTGCGCTTCGCCGATGCCGAAAAG
GTGGCCTCCTTCCTGGCCAGGGAAGTGCCGGGAATCGTGGTGCAGACGGTGCCTGGACAACCGGTCCTCTCCGTACGGGG
GACGGAGAAACAACTTTCTGAAGTGGAGAACCTGCTGGCTCAGATCGACCGGGCTCCCGAGCAAGGACCGCCCATCCTCC
AGCGTTCCTACCAGCTCTCCAACGCCAAGGCCGCCGACCTGGCCAAGGTGCTCCAGGAGGCCTTGCAAGCCCGGCAGGCC
CAGGCTCCCCAGGGCCAGGCCCGGCCTCAAGGCCCCACACGCCAGGCCACGGTGGTGGCGGACGAGCGCACCAACACCCT
GATCGTCACGGGTACGCAGGAGGATCTAGCCCTGGTGGAAGGCCTTATTCCCAAGCTGGACCAGGCGGTGCCCCAGGTGA
ACCTAAGGGTGCGCATCCAGGAGGTGCAGTCCAACTTCAGCCGAAACCTGGGCCTCAAGTGGAACACCATTGCCGGGGGA
AATGTAGCGGCCAGCATCCTGGACACGGGGCTTTCCCTTATCTTTGACAGCACCCGGAGCCTGGCCGCCCTGAACATCAT
CGCCACCCTCGAGGCCCTCCAGCGCCAGGGCCTTTCCCGAGCCCTTAGGGATGTGAACCAAACCGTGCTCAACAACCAAA
CCGCCCGCCTGCAGTCCGGGGAAACCTTCCTCATCCGCCGGGTGGTGGGAGACCGGGTGGAGCGGGTACCCTTCGACATC
GGCATCATCGTGGAGGTGACCCCCCAGATCACCGCCGACGGGCAGATCCTCCTCAACATCAAGGCGGAGGTTTCCGGGAA
CGTCCAGCGCAACCCCGTGGACGGGGACGTGGACCGCTTCACCAAGCAGGTGGTAACCACCACCCTGCGGGTGCGGGATG
GGCAGACCGTGGTCCTCGGGGGTCTCACCTCCCAGGAAAACAACCAGGTGCAGCAGGGGGTTCCCCTCCTCATGGACATC
CCCCTGATCGGGGAACTCTTCAAACAACGCACCCAGGAAACCACCGACCGGGAGCTTCTGGTGGTCATCACCGCCGACAT
CGTAAAAGAAACCGCAAGCCGCTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(389-448)

Bacterial type II/III secretion system short domain (Secretin_N)

(455-532)

Bacterial type II and III secretion system protein (Secretin)

(592-749)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Thermus thermophilus HB27

82.603

99.867

0.825

Multiple sequence alignment