Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   GO600_RS02595 Genome accession   NZ_CP046617
Coordinates   447413..447589 (-) Length   58 a.a.
NCBI ID   WP_245563304.1    Uniprot ID   -
Organism   Thermus antranikianii strain JCM 19900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442413..452589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO600_RS02580 (GO600_02575) - 443311..443865 (-) 555 WP_028493414.1 shikimate kinase -
  GO600_RS02585 (GO600_02580) aroC 443883..445034 (-) 1152 WP_028493413.1 chorismate synthase -
  GO600_RS02590 (GO600_02585) pilQ 445137..447401 (-) 2265 WP_418954023.1 secretin N-terminal domain-containing protein Machinery gene
  GO600_RS02595 pilW 447413..447589 (-) 177 WP_245563304.1 hypothetical protein Machinery gene
  GO600_RS02600 (GO600_02595) pilO 448381..449007 (-) 627 WP_028493410.1 type 4a pilus biogenesis protein PilO Machinery gene
  GO600_RS02605 (GO600_02600) pilN 448997..449620 (-) 624 WP_028493409.1 competence protein Machinery gene
  GO600_RS02610 (GO600_02605) pilM 449613..450746 (-) 1134 WP_028493408.1 type IV pilus assembly protein PilM Machinery gene
  GO600_RS02615 (GO600_02610) - 450938..451942 (-) 1005 WP_028493407.1 homoisocitrate dehydrogenase -
  GO600_RS02620 (GO600_02615) - 452012..452506 (-) 495 WP_028493406.1 DUF5317 domain-containing protein -

Sequence

Protein


Download         Length: 58 a.a.        Molecular weight: 6137.05 Da        Isoelectric Point: 4.1938

>NTDB_id=406057 GO600_RS02595 WP_245563304.1 447413..447589(-) (pilW) [Thermus antranikianii strain JCM 19900]
MSVAILETKEGYLVLPVGSLLPGSEAVLRRIESDRVVLALKDESLEIALENTQAGGGQ

Nucleotide


Download         Length: 177 bp        

>NTDB_id=406057 GO600_RS02595 WP_245563304.1 447413..447589(-) (pilW) [Thermus antranikianii strain JCM 19900]
GTGAGCGTGGCTATCCTAGAAACCAAGGAAGGGTACCTGGTGTTACCCGTGGGTAGCCTTCTTCCAGGTAGCGAGGCAGT
GCTTCGCCGCATAGAAAGCGACCGGGTGGTGTTGGCCTTGAAGGATGAAAGCTTGGAGATTGCCTTAGAAAACACGCAAG
CAGGAGGTGGCCAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

62.069

100

0.621

Multiple sequence alignment