Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GO600_RS02600 | Genome accession | NZ_CP046617 |
| Coordinates | 448381..449007 (-) | Length | 208 a.a. |
| NCBI ID | WP_028493410.1 | Uniprot ID | - |
| Organism | Thermus antranikianii strain JCM 19900 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 443381..454007
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GO600_RS02585 (GO600_02580) | aroC | 443883..445034 (-) | 1152 | WP_028493413.1 | chorismate synthase | - |
| GO600_RS02590 (GO600_02585) | pilQ | 445137..447401 (-) | 2265 | WP_418954023.1 | secretin N-terminal domain-containing protein | Machinery gene |
| GO600_RS02595 | pilW | 447413..447589 (-) | 177 | WP_245563304.1 | hypothetical protein | Machinery gene |
| GO600_RS02600 (GO600_02595) | pilO | 448381..449007 (-) | 627 | WP_028493410.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GO600_RS02605 (GO600_02600) | pilN | 448997..449620 (-) | 624 | WP_028493409.1 | competence protein | Machinery gene |
| GO600_RS02610 (GO600_02605) | pilM | 449613..450746 (-) | 1134 | WP_028493408.1 | type IV pilus assembly protein PilM | Machinery gene |
| GO600_RS02615 (GO600_02610) | - | 450938..451942 (-) | 1005 | WP_028493407.1 | homoisocitrate dehydrogenase | - |
| GO600_RS02620 (GO600_02615) | - | 452012..452506 (-) | 495 | WP_028493406.1 | DUF5317 domain-containing protein | - |
| GO600_RS02625 (GO600_02620) | - | 452557..453963 (-) | 1407 | WP_028493405.1 | HD-GYP domain-containing protein | - |
Sequence
Protein
Download Length: 208 a.a. Molecular weight: 22985.42 Da Isoelectric Point: 9.4989
>NTDB_id=406058 GO600_RS02600 WP_028493410.1 448381..449007(-) (pilO) [Thermus antranikianii strain JCM 19900]
MLARLGQREWALIAIALTLVVALLWYFFLIVPMRQETESVRQEINALVPERDKGRQAQRALPELRATIAELQAERQAFLR
ALPKEERLSQVLNEILTEAIRSGVTVRSFTRSPTSAPVPEVRAVNLALSLEAPFPETYAYLKRLEGLSRFSSLSGLNLSV
QGQDLNPLLSTSLTLTLYMLAKDLSQSEGNPQTQGTPPSQTTGQGGGR
MLARLGQREWALIAIALTLVVALLWYFFLIVPMRQETESVRQEINALVPERDKGRQAQRALPELRATIAELQAERQAFLR
ALPKEERLSQVLNEILTEAIRSGVTVRSFTRSPTSAPVPEVRAVNLALSLEAPFPETYAYLKRLEGLSRFSSLSGLNLSV
QGQDLNPLLSTSLTLTLYMLAKDLSQSEGNPQTQGTPPSQTTGQGGGR
Nucleotide
Download Length: 627 bp
>NTDB_id=406058 GO600_RS02600 WP_028493410.1 448381..449007(-) (pilO) [Thermus antranikianii strain JCM 19900]
GTGCTCGCTAGACTGGGACAGCGGGAGTGGGCCCTGATCGCCATCGCCCTCACCTTGGTGGTGGCCCTCCTCTGGTACTT
TTTCCTCATCGTCCCCATGCGTCAGGAAACGGAAAGCGTGCGCCAGGAGATTAACGCCCTTGTCCCCGAGCGGGATAAAG
GAAGGCAAGCCCAGCGCGCCCTTCCAGAACTCCGGGCCACCATCGCTGAGCTGCAAGCCGAGCGTCAGGCCTTTCTGAGG
GCGCTTCCCAAGGAGGAACGGCTTTCCCAGGTTCTGAACGAGATCCTGACCGAGGCCATAAGGAGCGGGGTCACGGTGCG
CTCCTTCACCCGCTCCCCCACCTCGGCTCCAGTACCGGAGGTGCGGGCGGTGAACCTGGCCCTTTCCCTCGAGGCGCCCT
TCCCCGAAACCTACGCCTATCTGAAGCGCCTGGAAGGGCTTTCCCGCTTCAGCTCCCTTTCCGGGCTCAACCTCAGCGTC
CAGGGTCAGGACTTAAATCCCCTCCTCTCCACCAGCTTGACGCTGACCCTCTACATGCTGGCCAAAGATCTTAGCCAGTC
CGAAGGAAATCCCCAGACGCAAGGAACTCCTCCCTCGCAGACAACAGGTCAAGGAGGTGGTCGGTGA
GTGCTCGCTAGACTGGGACAGCGGGAGTGGGCCCTGATCGCCATCGCCCTCACCTTGGTGGTGGCCCTCCTCTGGTACTT
TTTCCTCATCGTCCCCATGCGTCAGGAAACGGAAAGCGTGCGCCAGGAGATTAACGCCCTTGTCCCCGAGCGGGATAAAG
GAAGGCAAGCCCAGCGCGCCCTTCCAGAACTCCGGGCCACCATCGCTGAGCTGCAAGCCGAGCGTCAGGCCTTTCTGAGG
GCGCTTCCCAAGGAGGAACGGCTTTCCCAGGTTCTGAACGAGATCCTGACCGAGGCCATAAGGAGCGGGGTCACGGTGCG
CTCCTTCACCCGCTCCCCCACCTCGGCTCCAGTACCGGAGGTGCGGGCGGTGAACCTGGCCCTTTCCCTCGAGGCGCCCT
TCCCCGAAACCTACGCCTATCTGAAGCGCCTGGAAGGGCTTTCCCGCTTCAGCTCCCTTTCCGGGCTCAACCTCAGCGTC
CAGGGTCAGGACTTAAATCCCCTCCTCTCCACCAGCTTGACGCTGACCCTCTACATGCTGGCCAAAGATCTTAGCCAGTC
CGAAGGAAATCCCCAGACGCAAGGAACTCCTCCCTCGCAGACAACAGGTCAAGGAGGTGGTCGGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Thermus thermophilus HB27 |
71.579 |
91.346 |
0.654 |