Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GOY17_RS17950 Genome accession   NZ_CP046603
Coordinates   3949690..3951204 (+) Length   504 a.a.
NCBI ID   WP_157031387.1    Uniprot ID   -
Organism   Lysobacter soli strain XL170     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3944690..3956204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOY17_RS17925 (GOY17_17925) speE 3945939..3946793 (+) 855 WP_157031384.1 polyamine aminopropyltransferase -
  GOY17_RS17930 (GOY17_17930) - 3947022..3947681 (+) 660 WP_157031385.1 phosphotransferase -
  GOY17_RS17935 (GOY17_17935) - 3947683..3948795 (-) 1113 WP_157031386.1 acyltransferase -
  GOY17_RS17940 (GOY17_17940) - 3948851..3949189 (-) 339 WP_115844333.1 P-II family nitrogen regulator -
  GOY17_RS17945 (GOY17_17945) - 3949380..3949676 (+) 297 WP_115844335.1 accessory factor UbiK family protein -
  GOY17_RS17950 (GOY17_17950) comM 3949690..3951204 (+) 1515 WP_157031387.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GOY17_RS17955 (GOY17_17955) - 3951320..3951805 (-) 486 WP_157031388.1 hypothetical protein -
  GOY17_RS17960 (GOY17_17960) - 3951874..3952347 (-) 474 WP_157031389.1 hypothetical protein -
  GOY17_RS17965 (GOY17_17965) - 3952484..3953656 (-) 1173 WP_157031390.1 putative peptide maturation dehydrogenase -
  GOY17_RS17970 (GOY17_17970) - 3953897..3954244 (+) 348 WP_157031391.1 NHLP-related RiPP peptide -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 52939.80 Da        Isoelectric Point: 8.5301

>NTDB_id=406003 GOY17_RS17950 WP_157031387.1 3949690..3951204(+) (comM) [Lysobacter soli strain XL170]
MNLALVHSRARSGVRAPAVRVEVHLAGGLPAMSIVGLPEAAVRESKDRVRAAILCAQFEFPARRITVNLAPADLPKDGGR
FDLPIALGILAASGQIPLEALADGEFLGELGLTGELRAVDGVLPAALAAGDAGRQLIVPAGNGPEAALASRVEVRTARTL
LEVCAHLTGRKPLPFAEAPALERTPGPDLADVRGQSQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEATESE
ALEAAAIASVSGRGLDPARWRERPFRSPHHTASAVALVGGGAQPRPGEISLAHQGVLFLDELPEWDRRALEVLREPLESG
VITVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSPDAVRRYRGRVSGPLLDRIDLHVEVARLPPAALRPDAPA
GESTGTVRTRVVEARARQHARAGKTNAVLDQPETAAACRLADADRLLLERAVDALQLSARSMHRIMRVARTIADLDGADA
IGTAHLTEAISLRRATRAIEAAVA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=406003 GOY17_RS17950 WP_157031387.1 3949690..3951204(+) (comM) [Lysobacter soli strain XL170]
ATGAACCTGGCACTCGTGCACAGCCGTGCACGATCGGGCGTCCGTGCGCCCGCGGTACGCGTTGAAGTGCATCTGGCGGG
CGGATTGCCCGCGATGTCGATCGTCGGATTGCCCGAGGCGGCGGTACGCGAATCGAAGGATCGCGTGCGCGCGGCGATCC
TTTGCGCGCAGTTCGAATTCCCCGCGCGCCGCATCACGGTGAACCTCGCGCCGGCCGACCTGCCCAAGGACGGAGGCCGC
TTCGACCTGCCCATCGCGCTGGGCATCCTCGCGGCCAGCGGGCAGATCCCGCTGGAGGCGCTGGCCGACGGCGAATTCCT
TGGCGAGCTCGGACTCACGGGCGAACTGCGCGCGGTCGACGGCGTGCTGCCGGCCGCGCTGGCCGCCGGCGATGCCGGAC
GCCAACTGATCGTCCCGGCCGGGAACGGCCCCGAGGCCGCGCTGGCCAGCCGCGTCGAAGTCCGCACGGCGCGCACGTTG
CTGGAAGTCTGCGCACACCTCACGGGTCGCAAGCCGCTTCCGTTCGCCGAAGCACCCGCACTTGAACGCACGCCCGGACC
GGACCTCGCCGACGTGCGCGGCCAGTCCCAGGCGCGACGCGCGCTGGAGATTGCCGCGGCCGGCGGTCACCACCTTCTTC
TGATCGGCCCGCCCGGTTGCGGCAAGACGTTGCTGGCGTCTCGCCTCCCGGGCCTGTTGCCGGAGGCGACCGAAAGCGAA
GCGCTGGAAGCGGCGGCGATCGCGTCCGTCAGCGGACGCGGGCTCGATCCGGCGCGTTGGCGCGAGCGGCCCTTCCGATC
GCCGCACCACACCGCCAGTGCGGTCGCGCTGGTCGGCGGTGGCGCGCAGCCGCGGCCGGGCGAGATCTCGCTTGCGCACC
AAGGCGTGCTCTTTCTGGACGAATTGCCCGAATGGGATCGCCGCGCACTGGAAGTCCTGCGCGAACCGTTGGAGTCCGGC
GTCATCACCGTGTCGCGCGCGGCGCGCAGTGCGGAATTTCCGGCGCGATTTCAGCTCGTGGCGGCAATGAATCCCTGCCC
CTGCGGCTGGGCCGGCGACCCGTCCGGGCGATGCCGCTGCAGTCCGGACGCGGTGCGACGCTATCGAGGCCGCGTGTCGG
GGCCGCTGCTCGATCGCATCGACCTGCATGTCGAAGTCGCGCGCCTACCGCCCGCCGCGCTGCGACCCGACGCGCCCGCC
GGCGAATCCACCGGCACCGTCCGCACACGCGTCGTCGAAGCCCGCGCGCGGCAGCATGCGCGGGCAGGCAAGACCAACGC
CGTGCTCGACCAGCCCGAGACCGCAGCCGCGTGTCGGCTCGCCGACGCCGATCGGCTGCTGCTAGAACGCGCCGTGGACG
CCCTGCAGCTGTCGGCACGCTCGATGCACCGGATCATGCGTGTCGCACGAACGATCGCCGATCTCGATGGCGCGGACGCC
ATCGGTACGGCGCACCTGACGGAAGCTATTTCGCTACGGCGCGCAACGCGCGCGATCGAAGCCGCGGTGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.98

99.603

0.548
  comM Vibrio campbellii strain DS40M4

54.348

100

0.546
  comM Glaesserella parasuis strain SC1401

53.649

100

0.54
  comM Haemophilus influenzae Rd KW20

52.86

100

0.532
  comM Legionella pneumophila str. Paris

50.296

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.296

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.379

100

0.446

Multiple sequence alignment