Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GO602_RS26925 Genome accession   NZ_CP046602
Coordinates   5786139..5788283 (-) Length   714 a.a.
NCBI ID   WP_024916548.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5781139..5793283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS26910 (GO602_26885) - 5782803..5784446 (-) 1644 WP_124181006.1 AAA family ATPase -
  GO602_RS26915 (GO602_26890) aroB 5784453..5785559 (-) 1107 WP_058140600.1 3-dehydroquinate synthase -
  GO602_RS26920 (GO602_26895) aroK 5785609..5786127 (-) 519 WP_003095833.1 shikimate kinase AroK -
  GO602_RS26925 (GO602_26900) pilQ 5786139..5788283 (-) 2145 WP_024916548.1 type 4a pilus secretin PilQ Machinery gene
  GO602_RS26930 (GO602_26905) pilP 5788337..5788861 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP -
  GO602_RS26935 (GO602_26910) pilO 5788858..5789481 (-) 624 WP_024916549.1 type 4a pilus biogenesis protein PilO -
  GO602_RS26940 (GO602_26915) pilN 5789478..5790077 (-) 600 WP_024916550.1 type 4a pilus biogenesis protein PilN -
  GO602_RS26945 (GO602_26920) pilM 5790077..5791141 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 77504.07 Da        Isoelectric Point: 5.2241

>NTDB_id=405978 GO602_RS26925 WP_024916548.1 5786139..5788283(-) (pilQ) [Pseudomonas aeruginosa strain CMC-115]
MNSGLSRLGIALLAAMFAPALLAADLEKLDVAALPGDRVELKLQFDEPVAAPRGYTIEQPARIALDLPGVQNKLGTKNRE
LSVGNTRSVTVVEAKDRTRLIINLTTLSSYTTRVEGNNLFVVVGNSPAGASVASAAPVKASPAPASYAQPIKPKPYVPAG
RSIRNIDFQRGEKGEGNVVIDLSDPTLSPDIQEQGGKIRLDFAKTQLPDALRVRLDVKDFATPVQFVNASAQSDRTSIII
EPSGLYDYLVYQTDNRLTVSIKPMTTEDAERRKKDNFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITL
RLQNVPWDQALDLVLKTKGLDKRKLGNVLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKAADIAKLFQSVT
SDGGQEGKEGGRGSITVDDRTNSIIAYQPQERLDELRRIVSQLDIPVRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNW
NGYGKDGNIGIKDEDGMNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNGEIVS
QPKVVTSDKETAKILKGQEVPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAPDYQNVMNGVPPINKN
EVNAKILVNDGETIVIGGVFSNEQTKSVDKVPFLGDLPYLGRLFRRDTVTDRKNELLVFLTPRIMNNQAIAIGR

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=405978 GO602_RS26925 WP_024916548.1 5786139..5788283(-) (pilQ) [Pseudomonas aeruginosa strain CMC-115]
ATGAACAGTGGCCTCTCGCGCCTCGGGATCGCTTTGCTGGCCGCCATGTTCGCGCCGGCATTGCTCGCCGCGGACCTGGA
GAAACTCGACGTGGCGGCACTGCCAGGGGACCGGGTCGAGCTCAAGCTGCAATTCGACGAGCCCGTCGCCGCGCCGCGTG
GCTATACCATCGAGCAGCCGGCGCGAATCGCCCTCGATCTGCCGGGGGTGCAGAACAAGCTCGGCACCAAGAACCGCGAA
CTGAGCGTGGGCAATACGCGCAGCGTCACGGTGGTCGAGGCGAAGGACCGCACACGGTTGATCATCAACCTGACCACGCT
GTCGTCCTATACCACCCGGGTAGAGGGCAACAACCTCTTCGTGGTGGTCGGCAATTCGCCGGCCGGCGCCAGCGTCGCTT
CCGCCGCTCCGGTCAAGGCAAGCCCGGCTCCGGCCAGCTACGCCCAGCCGATCAAGCCCAAGCCATACGTGCCGGCGGGC
CGCTCCATCCGCAACATCGATTTCCAGCGTGGCGAAAAGGGCGAGGGCAACGTGGTCATCGACCTGTCCGACCCGACCTT
GAGCCCGGATATCCAGGAGCAGGGCGGCAAGATCCGCCTGGACTTCGCCAAGACCCAACTGCCGGATGCGCTGCGGGTTC
GCCTGGATGTCAAGGACTTCGCCACGCCGGTGCAGTTCGTCAACGCCAGTGCGCAATCCGACCGTACCAGCATCATCATC
GAACCGAGCGGGCTCTACGATTACCTGGTCTACCAGACTGACAATCGCCTGACCGTCAGCATCAAGCCGATGACCACGGA
AGACGCCGAGCGGCGCAAGAAGGACAACTTCGCCTATACCGGCGAGAAGCTGTCGCTGAACTTCCAGGACATCGACGTGC
GTTCGGTATTGCAGCTGATCGCCGACTTCACCGACCTGAACCTGGTGGCCTCGGATACGGTGCAGGGCAACATCACCCTG
CGCCTGCAGAACGTACCGTGGGACCAGGCGCTGGACCTGGTGCTGAAGACCAAGGGCCTGGACAAGCGCAAGCTCGGCAA
CGTACTGCTGGTGGCACCGGCCGACGAGATCGCTGCCCGCGAGCGCCAGGAGCTGGAAGCGCAGAAGCAGATCGCCGAGT
TGGCGCCGCTGCGCCGGGAGCTGATCCAGGTGAACTACGCCAAGGCCGCGGACATCGCCAAGCTGTTCCAGTCGGTGACC
AGCGATGGTGGCCAGGAAGGCAAGGAAGGCGGTCGTGGCTCAATCACCGTCGACGACCGTACCAACAGCATCATCGCCTA
TCAGCCCCAGGAGCGCCTGGACGAGCTGCGGCGGATCGTTTCGCAGCTGGATATCCCGGTGCGCCAGGTGATGATCGAGG
CGCGCATCGTCGAGGCCAACGTCGGCTACGACAAGAGCCTCGGGGTACGCTGGGGTGGCGCTTACCACAAGGGCAACTGG
AACGGCTACGGCAAGGACGGCAATATCGGGATCAAGGACGAGGACGGCATGAACTGCGGTCCGATCGCCGGCAACTGTAC
TTTCCCCACCACGGGTACCAGCAAGTCGCCGTCGCCGTTCGTCGACATCGGCGCCAAGGACGCTACCTCGGGGATCGGCA
TCGGCTTCATCACCGACAACATCATCCTCGACCTGCAACTGTCGGCGATGGAAAAGACCGGCAACGGCGAGATCGTCTCC
CAGCCCAAGGTCGTGACCTCGGACAAGGAAACCGCGAAGATCCTCAAGGGCCAGGAAGTGCCCTACCAGGAAGCCAGTTC
CAGTGGCGCTACCAGCACCTCGTTCAAGGAGGCCGCGCTGTCCCTCGAGGTGACCCCGCAGATCACGCCGGACAACCGGA
TCATCGTCGAAGTGAAGGTGACCAAGGATGCGCCGGATTACCAAAACGTGATGAATGGTGTGCCTCCGATCAACAAGAAC
GAGGTCAACGCCAAGATCCTGGTCAACGATGGCGAGACCATCGTCATCGGCGGCGTATTCAGCAACGAGCAGACCAAGTC
GGTGGACAAGGTGCCGTTCCTCGGCGACCTGCCCTACCTCGGGCGGCTGTTCCGGCGCGATACCGTTACCGACAGGAAAA
ACGAACTTCTGGTTTTCCTGACACCGCGGATCATGAATAATCAGGCCATCGCAATCGGTCGCTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(549-705)

AMIN domain (AMIN)

(38-122)

Secretin and TonB N terminus short domain (STN)

(307-353)

Bacterial type II/III secretion system short domain (Secretin_N)

(381-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

98.319

100

0.983
  pilQ Acinetobacter baumannii strain A118

40.699

100

0.408
  pilQ Acinetobacter baumannii D1279779

40.699

100

0.408
  comQ Acinetobacter baylyi ADP1

41.11

98.459

0.405

Multiple sequence alignment