Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PT7_RS06180 Genome accession   NC_015458
Coordinates   1379615..1381132 (-) Length   505 a.a.
NCBI ID   WP_013742343.1    Uniprot ID   F4GU18
Organism   Pusillimonas sp. T7-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1374615..1386132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT7_RS06160 (PT7_1262) pheS 1376623..1377645 (-) 1023 WP_013742338.1 phenylalanine--tRNA ligase subunit alpha -
  PT7_RS06165 (PT7_1263) rplT 1377716..1378075 (-) 360 WP_013742339.1 50S ribosomal protein L20 -
  PT7_RS06170 (PT7_1264) rpmI 1378089..1378286 (-) 198 WP_041683069.1 50S ribosomal protein L35 -
  PT7_RS06175 (PT7_1266) - 1378524..1379576 (-) 1053 WP_013742342.1 Ldh family oxidoreductase -
  PT7_RS06180 (PT7_1267) comM 1379615..1381132 (-) 1518 WP_013742343.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PT7_RS06185 (PT7_1268) - 1381254..1381532 (-) 279 WP_013742344.1 accessory factor UbiK family protein -
  PT7_RS06190 (PT7_1269) - 1381691..1382092 (-) 402 WP_013742345.1 hypothetical protein -
  PT7_RS06195 (PT7_1270) - 1382541..1382879 (+) 339 WP_013742346.1 P-II family nitrogen regulator -
  PT7_RS06200 (PT7_1271) - 1382967..1384193 (+) 1227 WP_013742347.1 ammonium transporter -
  PT7_RS06205 (PT7_1272) ptsP 1384263..1386020 (-) 1758 WP_013742348.1 phosphoenolpyruvate--protein phosphotransferase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53379.47 Da        Isoelectric Point: 7.9175

>NTDB_id=40597 PT7_RS06180 WP_013742343.1 1379615..1381132(-) (comM) [Pusillimonas sp. T7-7]
MSLAVLASRALCGLQALPVRVEVHMAPGLPAFHVVGLPDAGVRESRERVRSAILSSGFDFPAGRLTVNLAPADLPKESGR
FDLPIALAVLLASGQVVEAPADGAAGQIQDYVFAGELSLTGAIAPVAAPLAIALAVARSHPGAILVLPAGSADHAALVPD
LTVLAAGSLLDVAHHFSGVQALQVAKPPPLSFSDHIEPCLSEVRGQALARRVLEVAAAGGHSLLMSGPPGTGKSMLAYRL
PGLLPRLEPEQALEASALAGLSGQPPMFTDRPPFRSPHHSASVPALVGGGAYPRPGEISLAHQGVLFLDELPEFQRRVLE
SLREPLETGCVSIARASRTLTFPAAFQLVAAMNPCPCGWLGHKKKHCRCTPERIEAYRSRLSGPLLDRVDLQISLPGAES
DWIDLPEGEGSAAVRSRVLQCRARQQKRQGSTNARLSVAQISVHCQLSGEGSTLLAHAMQRWNWSARVVHRILRVSRTLA
DMSGSDQIASVHIAEAVQYRLPWDG

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=40597 PT7_RS06180 WP_013742343.1 1379615..1381132(-) (comM) [Pusillimonas sp. T7-7]
ATGTCATTAGCGGTGTTGGCGAGCAGGGCGCTTTGCGGTCTCCAGGCGCTGCCGGTACGTGTCGAAGTCCATATGGCGCC
AGGTTTGCCCGCCTTTCATGTAGTGGGCCTGCCTGACGCCGGCGTACGTGAAAGCCGTGAAAGAGTGCGGTCAGCCATAC
TCAGCAGCGGGTTCGATTTTCCTGCAGGGCGCCTGACCGTCAACCTTGCGCCAGCCGATCTTCCCAAAGAGTCCGGACGC
TTCGATTTGCCGATCGCCCTGGCTGTTCTGCTTGCGTCCGGGCAAGTGGTCGAGGCGCCTGCAGATGGCGCTGCGGGCCA
GATTCAAGACTATGTATTCGCGGGCGAGCTATCGCTAACAGGAGCCATCGCCCCGGTTGCTGCGCCGCTGGCCATCGCTT
TGGCCGTGGCGCGCAGCCATCCTGGGGCCATTCTGGTGCTTCCCGCCGGCAGTGCTGATCATGCGGCCCTGGTGCCGGAC
CTGACCGTATTGGCAGCAGGCAGCCTGCTTGATGTGGCCCATCATTTTTCCGGCGTACAAGCCTTGCAGGTCGCCAAGCC
GCCTCCGCTGAGCTTTAGTGATCATATTGAGCCCTGTCTGTCAGAAGTCAGGGGGCAGGCGCTGGCGCGCCGGGTGCTTG
AGGTTGCAGCAGCAGGGGGCCATAGCCTGCTCATGTCTGGCCCTCCCGGTACCGGTAAAAGCATGCTGGCCTACCGACTT
CCTGGTTTGCTGCCCAGGCTGGAGCCCGAGCAGGCGCTTGAAGCCTCGGCGTTAGCGGGCTTGAGCGGACAGCCTCCTAT
GTTTACCGACCGTCCTCCATTCCGTTCGCCCCACCACTCGGCATCGGTGCCGGCCCTGGTGGGCGGTGGCGCCTATCCCA
GGCCGGGTGAAATCAGCCTGGCCCACCAGGGTGTGCTTTTTCTGGACGAACTGCCAGAGTTCCAGCGGCGAGTGCTTGAA
TCCCTGCGCGAGCCGCTGGAAACCGGCTGCGTGTCGATTGCGCGCGCATCGCGCACACTGACTTTTCCTGCCGCCTTCCA
GCTGGTCGCCGCCATGAATCCCTGTCCTTGCGGCTGGCTGGGCCATAAAAAGAAACATTGCCGTTGTACGCCTGAGCGAA
TCGAGGCCTATCGGAGCAGGTTGTCGGGCCCCTTGCTCGACCGGGTCGATCTACAAATTTCCCTTCCTGGCGCTGAGTCC
GACTGGATCGATCTGCCTGAAGGTGAAGGCTCGGCGGCGGTGCGGTCGCGGGTCCTGCAGTGTCGTGCGCGCCAGCAGAA
GCGCCAGGGCAGCACCAATGCCCGGCTGAGTGTGGCCCAAATCAGTGTTCATTGTCAGCTGAGCGGTGAGGGCAGCACGC
TGTTGGCGCATGCAATGCAGCGCTGGAACTGGTCGGCCAGGGTTGTGCACCGTATTCTTCGGGTAAGCCGTACCCTGGCC
GATATGTCGGGATCTGATCAGATTGCATCCGTGCATATTGCGGAAGCCGTGCAGTACCGGCTGCCCTGGGATGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-145)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4GU18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.814

100

0.489
  comM Vibrio campbellii strain DS40M4

47.14

100

0.473
  comM Haemophilus influenzae Rd KW20

46.471

100

0.469
  comM Glaesserella parasuis strain SC1401

44.401

100

0.448
  comM Legionella pneumophila str. Paris

44.554

100

0.446
  comM Legionella pneumophila strain ERS1305867

44.554

100

0.446
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.659

99.802

0.426

Multiple sequence alignment