Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GO004_RS01165 Genome accession   NZ_CP046591
Coordinates   193852..194148 (+) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain R31     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188852..199148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS01140 (GO004_01130) yqhB 188909..190237 (-) 1329 WP_074794463.1 hemolysin family protein -
  GO004_RS01145 (GO004_01135) corA 190380..191333 (+) 954 WP_004399136.1 magnesium transporter CorA -
  GO004_RS01150 (GO004_01140) - 191335..191532 (+) 198 WP_014480259.1 CBS domain-containing protein -
  GO004_RS01155 (GO004_01145) comGA 191744..192814 (+) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  GO004_RS01160 (GO004_01150) comGB 192801..193838 (+) 1038 WP_015714257.1 comG operon protein ComGB Machinery gene
  GO004_RS01165 (GO004_01155) comGC 193852..194148 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  GO004_RS01170 (GO004_01160) comGD 194138..194569 (+) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  GO004_RS01175 (GO004_01165) comGE 194553..194900 (+) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  GO004_RS01180 (GO004_01170) comGF 194926..195309 (+) 384 WP_195727813.1 competence type IV pilus minor pilin ComGF Machinery gene
  GO004_RS01185 (GO004_01175) comGG 195310..195684 (+) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  GO004_RS01190 (GO004_01180) spoIITA 195756..195935 (+) 180 WP_029726723.1 YqzE family protein -
  GO004_RS01195 (GO004_01185) yqzG 195977..196303 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  GO004_RS01200 (GO004_01190) tapA 196573..197334 (+) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  GO004_RS01205 (GO004_01195) sipW 197318..197890 (+) 573 WP_003246088.1 signal peptidase I SipW -
  GO004_RS01210 (GO004_01200) tasA 197954..198739 (+) 786 WP_014664586.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=405765 GO004_RS01165 WP_003230162.1 193852..194148(+) (comGC) [Bacillus subtilis strain R31]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=405765 GO004_RS01165 WP_003230162.1 193852..194148(+) (comGC) [Bacillus subtilis strain R31]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment