Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   GO004_RS01185 Genome accession   NZ_CP046591
Coordinates   195310..195684 (+) Length   124 a.a.
NCBI ID   WP_029726722.1    Uniprot ID   -
Organism   Bacillus subtilis strain R31     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 190310..200684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS01145 (GO004_01135) corA 190380..191333 (+) 954 WP_004399136.1 magnesium transporter CorA -
  GO004_RS01150 (GO004_01140) - 191335..191532 (+) 198 WP_014480259.1 CBS domain-containing protein -
  GO004_RS01155 (GO004_01145) comGA 191744..192814 (+) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  GO004_RS01160 (GO004_01150) comGB 192801..193838 (+) 1038 WP_015714257.1 comG operon protein ComGB Machinery gene
  GO004_RS01165 (GO004_01155) comGC 193852..194148 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  GO004_RS01170 (GO004_01160) comGD 194138..194569 (+) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  GO004_RS01175 (GO004_01165) comGE 194553..194900 (+) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  GO004_RS01180 (GO004_01170) comGF 194926..195309 (+) 384 WP_195727813.1 competence type IV pilus minor pilin ComGF Machinery gene
  GO004_RS01185 (GO004_01175) comGG 195310..195684 (+) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  GO004_RS01190 (GO004_01180) spoIITA 195756..195935 (+) 180 WP_029726723.1 YqzE family protein -
  GO004_RS01195 (GO004_01185) yqzG 195977..196303 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  GO004_RS01200 (GO004_01190) tapA 196573..197334 (+) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  GO004_RS01205 (GO004_01195) sipW 197318..197890 (+) 573 WP_003246088.1 signal peptidase I SipW -
  GO004_RS01210 (GO004_01200) tasA 197954..198739 (+) 786 WP_014664586.1 biofilm matrix protein TasA -
  GO004_RS01215 (GO004_01205) sinR 198832..199167 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  GO004_RS01220 (GO004_01210) sinI 199201..199374 (-) 174 WP_003230187.1 anti-repressor SinI Regulator
  GO004_RS01225 (GO004_01215) yqhG 199557..200351 (-) 795 WP_003230200.1 YqhG family protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14443.63 Da        Isoelectric Point: 7.8383

>NTDB_id=405769 GO004_RS01185 WP_029726722.1 195310..195684(+) (comGG) [Bacillus subtilis strain R31]
MYCTRGFIYPAVLFVSALVLLIVNFAAAQYISRCMFEKETKELYIGENLLQNGVLLSVRHVLEERKGQEGTEQFPYGRVS
YYIHDTSIKEQKEINLRVSTESGTERTAQIVFDQKQKKLLRWTE

Nucleotide


Download         Length: 375 bp        

>NTDB_id=405769 GO004_RS01185 WP_029726722.1 195310..195684(+) (comGG) [Bacillus subtilis strain R31]
ATGTATTGTACAAGAGGGTTTATTTACCCAGCTGTTCTTTTTGTGTCAGCGCTTGTGCTGTTAATCGTGAACTTTGCTGC
TGCTCAATATATTTCACGCTGCATGTTTGAGAAGGAAACAAAAGAGTTATACATAGGAGAGAATTTGCTTCAAAATGGGG
TGCTTCTTTCGGTCCGGCATGTTCTAGAGGAACGGAAAGGCCAGGAGGGTACGGAGCAATTTCCATATGGACGGGTTTCT
TATTACATTCATGATACATCGATAAAAGAACAAAAAGAAATCAACTTAAGAGTGTCAACGGAGTCGGGAACAGAAAGAAC
TGCACAGATCGTGTTTGATCAAAAACAGAAAAAACTGCTGAGATGGACAGAATAA

Domains

Predicted by InterproScan.

ComG operon protein 7 (ComGG)

(30-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Bacillus subtilis subsp. subtilis str. 168

95.161

100

0.952

Multiple sequence alignment