Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GNH96_RS07815 Genome accession   NZ_CP046565
Coordinates   1608975..1610495 (-) Length   506 a.a.
NCBI ID   WP_169603164.1    Uniprot ID   A0A858Q7Y1
Organism   Methylococcus geothermalis strain IM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1603975..1615495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNH96_RS07780 (GNH96_07750) - 1604473..1604754 (+) 282 WP_169603160.1 DUF4258 domain-containing protein -
  GNH96_RS16320 (GNH96_07755) - 1604751..1604981 (+) 231 WP_169603161.1 type II toxin-antitoxin system MqsA family antitoxin -
  GNH96_RS16325 (GNH96_07760) - 1605021..1605146 (+) 126 WP_169603162.1 helix-turn-helix transcriptional regulator -
  GNH96_RS07810 (GNH96_07780) rep 1606975..1608978 (-) 2004 WP_169603163.1 DNA helicase Rep -
  GNH96_RS07815 (GNH96_07785) comM 1608975..1610495 (-) 1521 WP_169603164.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GNH96_RS07820 (GNH96_07790) - 1610504..1610755 (-) 252 WP_169604631.1 accessory factor UbiK family protein -
  GNH96_RS07825 (GNH96_07795) glnK 1611017..1611355 (+) 339 WP_169603165.1 P-II family nitrogen regulator -
  GNH96_RS07830 (GNH96_07800) - 1611387..1612829 (+) 1443 WP_169603166.1 ammonium transporter -
  GNH96_RS07835 (GNH96_07805) - 1612949..1613401 (-) 453 WP_169603167.1 DUF1810 domain-containing protein -
  GNH96_RS07840 (GNH96_07810) - 1613373..1613645 (-) 273 WP_169603168.1 addiction module protein -
  GNH96_RS07845 (GNH96_07815) trxC 1613683..1614102 (-) 420 WP_169603169.1 thioredoxin TrxC -
  GNH96_RS07850 (GNH96_07820) - 1614107..1614325 (-) 219 WP_169603170.1 DUF2892 domain-containing protein -
  GNH96_RS07855 (GNH96_07825) grxC 1614507..1614740 (+) 234 WP_323848042.1 glutaredoxin 3 -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54095.09 Da        Isoelectric Point: 7.7686

>NTDB_id=405583 GNH96_RS07815 WP_169603164.1 1608975..1610495(-) (comM) [Methylococcus geothermalis strain IM1]
MALAIVHSRARQGIEAPEVTVEVHISPGLPNLTIVGLPETAVRESKDRVRGALITTGFEFPAQRITVNLAPADLPKEGGR
FDLPIALGILAASKQLRTERLADMECVGELALTGELRPVPGALPVAIQSRRARRELIVPLDNAGEAALVSGASVLPARHL
LDVCAHLDGSRPLAAAESRTEASPTSEGLPDLAEVRGQFQAKRALEIAAAGRHNLLMLGPPGTGKSMLAARLPGILPDLT
EDEALETAAVASVSGMPFDPAAWRRPPYRAPHHTASAPALVGGGSTPKPGEISLAHNGVLFLDELPEFDRRVLEVLREPL
ESGGITISRAAQRLDFPARFQLIAAMNPCPCGYLGDASGRCHCSTEQVSRYRMRISGPLLDRIDMHIDVPRQDPAALLDT
APTSEESSAAVRSRVIAGREKALHRSGQPNALLTPRQIERHCIPDSAGRVLLEQAMARLNLSHRAYHRILKLARTIADLA
GSEAITAAHIGEAISYRRLDRAPAAR

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=405583 GNH96_RS07815 WP_169603164.1 1608975..1610495(-) (comM) [Methylococcus geothermalis strain IM1]
ATGGCGCTCGCCATCGTCCACAGCCGCGCCCGCCAGGGCATCGAGGCGCCGGAAGTCACGGTGGAAGTCCACATCTCCCC
GGGGCTCCCCAACCTCACCATCGTCGGCCTGCCGGAAACCGCCGTGCGCGAGAGCAAGGACCGGGTGCGGGGCGCACTGA
TCACCACCGGCTTCGAATTTCCCGCCCAGCGCATCACGGTCAACCTGGCTCCGGCCGATCTACCCAAGGAAGGCGGCCGT
TTCGACCTGCCCATCGCCCTCGGCATCCTGGCTGCGTCCAAACAGCTCCGCACCGAGCGGCTGGCGGATATGGAATGTGT
CGGCGAACTGGCCCTGACCGGCGAACTGCGCCCGGTGCCCGGCGCCCTGCCGGTCGCCATCCAGTCGCGCCGCGCCCGGC
GCGAACTGATCGTCCCTTTGGACAATGCCGGCGAAGCGGCCCTGGTCTCCGGGGCCAGCGTGCTCCCGGCCCGCCATCTG
CTCGACGTCTGCGCCCATCTGGACGGCAGCCGCCCTCTCGCCGCTGCCGAATCGCGCACCGAAGCGTCTCCGACAAGCGA
GGGACTTCCCGATCTCGCCGAAGTCCGCGGCCAGTTCCAGGCCAAGCGCGCCCTGGAAATCGCCGCCGCCGGCCGCCACA
ACCTGCTGATGCTGGGCCCGCCCGGCACCGGCAAATCCATGCTGGCCGCCCGCTTGCCCGGCATTCTGCCCGATCTGACC
GAGGACGAAGCGCTGGAAACCGCGGCGGTCGCCTCGGTCAGCGGCATGCCCTTCGACCCGGCGGCCTGGCGCCGCCCGCC
GTACCGCGCCCCCCATCACACCGCCTCCGCCCCGGCGCTGGTCGGCGGAGGAAGCACGCCGAAGCCCGGTGAGATTTCGC
TGGCCCACAATGGCGTGCTATTCCTGGACGAGCTGCCGGAATTCGACCGGCGCGTCCTGGAAGTCCTGCGCGAACCCTTG
GAAAGCGGCGGCATCACCATTTCCCGCGCCGCCCAACGGCTGGACTTCCCGGCCCGGTTCCAGCTCATCGCCGCGATGAA
TCCCTGCCCCTGCGGCTATCTGGGCGACGCCTCCGGACGCTGCCATTGTTCGACGGAACAAGTCTCGCGCTACCGGATGC
GCATCTCCGGCCCCTTGCTGGATCGGATCGACATGCACATCGACGTGCCACGGCAGGATCCGGCCGCTCTGCTGGACACG
GCCCCCACGAGCGAAGAATCCAGCGCCGCGGTCCGGAGCCGCGTGATCGCCGGCCGCGAAAAGGCGCTTCACCGCAGCGG
CCAGCCCAACGCCCTCCTCACGCCGCGCCAGATCGAGCGCCACTGCATTCCGGACAGCGCGGGACGCGTCTTGCTGGAAC
AGGCCATGGCGCGACTGAACCTGTCGCACCGCGCCTATCACCGCATCCTCAAACTCGCCCGCACCATCGCCGATCTCGCC
GGCAGCGAAGCGATCACCGCCGCTCACATCGGCGAAGCCATCAGCTACCGGCGTCTCGACCGGGCTCCCGCCGCCCGATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A858Q7Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.088

99.012

0.555
  comM Vibrio campbellii strain DS40M4

55.289

99.012

0.547
  comM Haemophilus influenzae Rd KW20

54.167

99.605

0.54
  comM Glaesserella parasuis strain SC1401

53.465

99.802

0.534
  comM Legionella pneumophila str. Paris

49.398

98.419

0.486
  comM Legionella pneumophila strain ERS1305867

49.398

98.419

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.457

100

0.466

Multiple sequence alignment