Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GM695_RS06045 | Genome accession | NZ_CP046531 |
| Coordinates | 1221982..1223175 (+) | Length | 397 a.a. |
| NCBI ID | WP_159629607.1 | Uniprot ID | - |
| Organism | Mannheimia pernigra strain ZY170218 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1216982..1228175
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM695_RS06020 (GM695_06010) | - | 1217673..1218167 (+) | 495 | WP_159629590.1 | dihydrofolate reductase | - |
| GM695_RS06025 (GM695_06015) | - | 1218295..1218528 (+) | 234 | WP_159629593.1 | YgjV family protein | - |
| GM695_RS06030 (GM695_06020) | radA | 1218567..1219946 (-) | 1380 | WP_159629596.1 | DNA repair protein RadA | Machinery gene |
| GM695_RS06035 (GM695_06025) | pilA | 1220127..1220576 (+) | 450 | WP_159629603.1 | prepilin peptidase-dependent pilin | Machinery gene |
| GM695_RS06040 (GM695_06030) | pilB | 1220598..1221998 (+) | 1401 | WP_159629605.1 | GspE/PulE family protein | Machinery gene |
| GM695_RS06045 (GM695_06035) | pilC | 1221982..1223175 (+) | 1194 | WP_159629607.1 | type II secretion system F family protein | Machinery gene |
| GM695_RS06050 (GM695_06040) | - | 1223178..1223834 (+) | 657 | WP_159629610.1 | prepilin peptidase | - |
| GM695_RS06055 (GM695_06045) | coaE | 1223866..1224504 (+) | 639 | WP_159629613.1 | dephospho-CoA kinase | - |
| GM695_RS06060 (GM695_06050) | yacG | 1224486..1224671 (+) | 186 | WP_159629615.1 | DNA gyrase inhibitor YacG | - |
| GM695_RS06065 (GM695_06055) | holA | 1224672..1225694 (-) | 1023 | WP_159629616.1 | DNA polymerase III subunit delta | - |
| GM695_RS06070 (GM695_06060) | lptE | 1225735..1226223 (-) | 489 | WP_159629619.1 | LPS assembly lipoprotein LptE | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 45593.17 Da Isoelectric Point: 9.3054
>NTDB_id=405159 GM695_RS06045 WP_159629607.1 1221982..1223175(+) (pilC) [Mannheimia pernigra strain ZY170218]
MAKIYEYHWKAVDRFQQKRKGSRLSSSREELESMLLMKGYEQIRIHRNFVLSQNPKREQISQFISQLALLVNSAISLKQA
LSMILQNCRNIKMYQWLSELILLIENGYSFSQSLEKQDKFIANQELQLIKMGEQSGKLGIILTNLAKSRAKSDKLAKKVK
KILFYPAIVLFISLSLSLGLLIFIVPQFAELYGTKEKALPLITEILFSLSQCLIEQKHLLLSLLLAVVFFLFFAKRENGF
VRLKMELLSKLPVFRQIIQQARIVFFSQNMALMLNAHIPLDLVLKSFLSEKSDDPILQKEVEFMLNLLQQGYPFSQGINP
NVFGLDMPQMIEIGEQSGNVANICEHISEMYQQKLDYQIDILSQLLEPMLMLLMGIIVGTIIVGLYLPIFDMGSLVE
MAKIYEYHWKAVDRFQQKRKGSRLSSSREELESMLLMKGYEQIRIHRNFVLSQNPKREQISQFISQLALLVNSAISLKQA
LSMILQNCRNIKMYQWLSELILLIENGYSFSQSLEKQDKFIANQELQLIKMGEQSGKLGIILTNLAKSRAKSDKLAKKVK
KILFYPAIVLFISLSLSLGLLIFIVPQFAELYGTKEKALPLITEILFSLSQCLIEQKHLLLSLLLAVVFFLFFAKRENGF
VRLKMELLSKLPVFRQIIQQARIVFFSQNMALMLNAHIPLDLVLKSFLSEKSDDPILQKEVEFMLNLLQQGYPFSQGINP
NVFGLDMPQMIEIGEQSGNVANICEHISEMYQQKLDYQIDILSQLLEPMLMLLMGIIVGTIIVGLYLPIFDMGSLVE
Nucleotide
Download Length: 1194 bp
>NTDB_id=405159 GM695_RS06045 WP_159629607.1 1221982..1223175(+) (pilC) [Mannheimia pernigra strain ZY170218]
ATGGCGAAAATCTATGAATACCATTGGAAAGCAGTTGATCGTTTCCAACAAAAACGTAAAGGCAGCCGATTATCTAGCAG
CCGAGAAGAGCTTGAAAGTATGTTGCTAATGAAAGGTTATGAGCAGATTCGCATTCATCGAAACTTCGTTTTATCTCAAA
ATCCGAAAAGAGAGCAGATCAGCCAATTTATTTCCCAGCTTGCGTTATTAGTGAATTCCGCTATATCGTTAAAACAGGCT
CTTTCGATGATTTTACAAAACTGCCGAAATATTAAAATGTATCAATGGCTAAGCGAGCTCATTTTGCTGATTGAAAATGG
TTATTCTTTTTCACAATCATTAGAGAAACAAGATAAATTTATTGCTAATCAAGAACTTCAACTGATTAAAATGGGCGAGC
AAAGCGGAAAACTAGGTATCATCTTAACGAATTTGGCGAAAAGCCGAGCTAAGTCTGATAAGTTAGCTAAAAAAGTGAAG
AAAATCCTGTTTTATCCTGCGATTGTATTGTTTATTTCCCTGTCTCTTTCTCTCGGATTGTTGATCTTCATTGTGCCCCA
ATTTGCAGAACTTTACGGCACAAAAGAGAAAGCCTTACCACTGATTACGGAAATACTATTTTCTCTTTCTCAGTGTTTGA
TTGAACAGAAGCATCTTCTACTTAGTTTATTACTAGCGGTCGTTTTTTTCCTCTTTTTTGCAAAAAGAGAGAACGGGTTT
GTGAGGTTAAAAATGGAGTTATTGTCTAAACTCCCTGTATTTCGACAAATCATACAGCAAGCCCGTATTGTCTTTTTTAG
CCAAAATATGGCTTTAATGTTGAATGCTCATATTCCGTTAGATTTGGTATTAAAATCCTTTTTATCTGAAAAAAGCGACG
ATCCTATATTACAAAAAGAGGTTGAGTTTATGCTAAATCTCTTGCAACAAGGCTACCCATTTTCGCAAGGCATTAATCCA
AATGTGTTTGGCTTAGATATGCCACAAATGATCGAAATCGGCGAGCAAAGCGGCAACGTTGCCAACATATGCGAACATAT
TAGCGAGATGTACCAACAAAAACTGGATTATCAAATTGATATACTTTCTCAGTTATTAGAGCCAATGTTGATGTTACTGA
TGGGAATAATTGTGGGGACTATTATTGTCGGTTTATATCTACCCATTTTTGATATGGGAAGTTTAGTGGAGTAA
ATGGCGAAAATCTATGAATACCATTGGAAAGCAGTTGATCGTTTCCAACAAAAACGTAAAGGCAGCCGATTATCTAGCAG
CCGAGAAGAGCTTGAAAGTATGTTGCTAATGAAAGGTTATGAGCAGATTCGCATTCATCGAAACTTCGTTTTATCTCAAA
ATCCGAAAAGAGAGCAGATCAGCCAATTTATTTCCCAGCTTGCGTTATTAGTGAATTCCGCTATATCGTTAAAACAGGCT
CTTTCGATGATTTTACAAAACTGCCGAAATATTAAAATGTATCAATGGCTAAGCGAGCTCATTTTGCTGATTGAAAATGG
TTATTCTTTTTCACAATCATTAGAGAAACAAGATAAATTTATTGCTAATCAAGAACTTCAACTGATTAAAATGGGCGAGC
AAAGCGGAAAACTAGGTATCATCTTAACGAATTTGGCGAAAAGCCGAGCTAAGTCTGATAAGTTAGCTAAAAAAGTGAAG
AAAATCCTGTTTTATCCTGCGATTGTATTGTTTATTTCCCTGTCTCTTTCTCTCGGATTGTTGATCTTCATTGTGCCCCA
ATTTGCAGAACTTTACGGCACAAAAGAGAAAGCCTTACCACTGATTACGGAAATACTATTTTCTCTTTCTCAGTGTTTGA
TTGAACAGAAGCATCTTCTACTTAGTTTATTACTAGCGGTCGTTTTTTTCCTCTTTTTTGCAAAAAGAGAGAACGGGTTT
GTGAGGTTAAAAATGGAGTTATTGTCTAAACTCCCTGTATTTCGACAAATCATACAGCAAGCCCGTATTGTCTTTTTTAG
CCAAAATATGGCTTTAATGTTGAATGCTCATATTCCGTTAGATTTGGTATTAAAATCCTTTTTATCTGAAAAAAGCGACG
ATCCTATATTACAAAAAGAGGTTGAGTTTATGCTAAATCTCTTGCAACAAGGCTACCCATTTTCGCAAGGCATTAATCCA
AATGTGTTTGGCTTAGATATGCCACAAATGATCGAAATCGGCGAGCAAAGCGGCAACGTTGCCAACATATGCGAACATAT
TAGCGAGATGTACCAACAAAAACTGGATTATCAAATTGATATACTTTCTCAGTTATTAGAGCCAATGTTGATGTTACTGA
TGGGAATAATTGTGGGGACTATTATTGTCGGTTTATATCTACCCATTTTTGATATGGGAAGTTTAGTGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
56.25 |
100 |
0.567 |
| pilC | Haemophilus influenzae Rd KW20 |
41.147 |
100 |
0.416 |
| pilC | Haemophilus influenzae 86-028NP |
40.15 |
100 |
0.406 |