Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   GOM46_RS06795 Genome accession   NZ_CP046525
Coordinates   1361628..1363586 (-) Length   652 a.a.
NCBI ID   WP_235083390.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1356628..1368586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS06775 (GOM46_06750) - 1357849..1358541 (-) 693 WP_235083386.1 tyrosine-protein kinase -
  GOM46_RS06780 (GOM46_06755) - 1358552..1359244 (-) 693 WP_235083387.1 CspC family polysaccharide chain length determinant protein -
  GOM46_RS06785 (GOM46_06760) cps4B 1359253..1359984 (-) 732 WP_235083388.1 capsular polysaccharide biosynthesis protein Cps4B -
  GOM46_RS06790 (GOM46_06765) - 1359986..1361434 (-) 1449 WP_235083389.1 LCP family protein -
  GOM46_RS06795 (GOM46_06770) amiA3 1361628..1363586 (-) 1959 WP_235083390.1 peptide ABC transporter substrate-binding protein Regulator
  GOM46_RS06800 (GOM46_06775) amiA 1363745..1365712 (-) 1968 WP_235083391.1 peptide ABC transporter substrate-binding protein Regulator
  GOM46_RS06805 (GOM46_06780) - 1365881..1367491 (-) 1611 WP_235083392.1 glycoside hydrolase family 13 protein -
  GOM46_RS06810 - 1367643..1368431 (+) 789 Protein_1322 DUF1846 domain-containing protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72186.85 Da        Isoelectric Point: 4.6635

>NTDB_id=405083 GOM46_RS06795 WP_235083390.1 1361628..1363586(-) (amiA3) [Streptococcus infantis strain SO]
MKLKKHLIGVGLTLAATVLLTACGQSASDGKTYSSTFGADPTTFNYLLDYAGDNTAIVTNLVDGLLENDNYGNLIPSLAK
EWSVSKDGLTYTYKLREDAKWYTSDGEEYAPVKAQDFVTGIKYAADNKGQALDLIQNSIKGLDDYVTGANTDFSNVGVKA
IDDYTVEYTLTRPEPFWNSKTTNSILFPVNEEFLASKGKDFGTLKPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDQEKV
TIEKVKLAYFDGSDQDLTIRNFESGAYSSAGVYPNSSNFAKTKEKYKDNIVYSLQDATSWYYNFNVNRGAYNHTAKTSDE
QKQATQAAVLNKNFRQAINFAIDRTAYSAQSNGEEAAKNTLRNTLVPPTFVQVGDKTFGETVASKLVNYGTQWANMNLED
AQDGYFNEEKAQAKFAEAKKELEAQGVSFPIHLDLPVDQVNKTLLSGTNSIKQSIESTLGSENVVVDVIQLSTDDYTNAT
AQAPTPADHDYDLNLDGWSADYQDPSTYLNPFNSEDGFYLKILGLDPSKDANKITSLGLDQYTQKLKTADAENTDVAKRY
ENYADAQAWLIDSSLLIPVVSNGGGASVTRVTPFTRAYSLVGIKGTGSNYKYMRLQTDVVTSSQFAEAKAKWEQERKNSV
EKSQKEFESHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=405083 GOM46_RS06795 WP_235083390.1 1361628..1363586(-) (amiA3) [Streptococcus infantis strain SO]
ATGAAGCTTAAAAAACATTTGATTGGAGTGGGGTTGACGCTTGCTGCTACGGTTCTATTGACAGCCTGTGGCCAGTCAGC
ATCAGACGGCAAGACATACTCGTCTACCTTTGGTGCAGATCCGACAACCTTTAACTATCTCTTGGATTACGCTGGTGATA
ACACTGCTATTGTAACCAACTTGGTAGATGGTTTGCTTGAAAATGATAACTACGGGAACCTCATTCCATCCCTTGCAAAA
GAGTGGAGTGTTTCTAAAGACGGTTTAACTTATACCTACAAACTCCGTGAAGATGCTAAGTGGTATACTTCAGATGGAGA
AGAGTATGCTCCTGTTAAAGCTCAAGACTTTGTAACTGGTATCAAGTACGCTGCTGATAACAAGGGTCAAGCTCTGGATT
TGATTCAAAACTCTATCAAGGGTTTGGATGATTATGTAACAGGTGCTAATACGGACTTTTCAAATGTTGGTGTAAAAGCT
ATAGACGATTACACAGTTGAGTATACTTTGACTCGTCCAGAGCCATTCTGGAACTCTAAGACAACTAACAGTATCTTGTT
CCCTGTAAACGAAGAATTCCTTGCTTCTAAAGGAAAAGACTTCGGAACTCTGAAACCAGATAGTATTCTTTATAGTGGAC
CATATTTGTTAAAAGATTTTACATCTAAGTCTTCTATCGAGTATGTGAAAAACCCACATTACTATGACCAAGAAAAGGTA
ACGATTGAAAAGGTAAAATTGGCCTACTTTGATGGCTCAGACCAAGACTTGACGATCCGAAACTTTGAAAGTGGCGCATA
CTCATCTGCAGGTGTTTATCCAAATAGTTCAAACTTTGCTAAGACAAAGGAAAAATACAAGGACAATATCGTTTATAGTT
TGCAAGATGCGACATCTTGGTACTATAACTTTAACGTCAACCGCGGTGCTTATAACCACACTGCAAAAACAAGCGATGAA
CAAAAACAAGCAACTCAAGCTGCAGTTTTGAATAAAAACTTCCGTCAGGCAATCAACTTCGCCATTGATCGTACAGCTTA
TTCAGCCCAATCAAACGGTGAAGAAGCAGCTAAGAACACTCTTCGTAACACACTTGTGCCACCGACTTTTGTACAAGTTG
GAGACAAGACTTTTGGTGAAACAGTTGCTTCTAAATTGGTGAACTATGGTACACAATGGGCAAATATGAATCTTGAAGAT
GCTCAAGATGGTTATTTCAACGAAGAAAAAGCACAAGCTAAGTTTGCAGAAGCTAAAAAAGAATTAGAAGCTCAAGGTGT
GAGCTTCCCAATTCATTTGGATTTGCCTGTAGACCAAGTTAACAAGACTTTGCTTTCAGGTACAAACTCCATCAAGCAAT
CAATCGAATCAACGCTTGGTTCTGAAAATGTAGTGGTTGATGTTATCCAATTATCGACAGATGATTATACAAATGCAACA
GCTCAAGCACCAACTCCAGCAGATCATGACTATGATTTGAATTTGGATGGATGGTCAGCTGACTATCAAGACCCTTCAAC
TTACCTCAATCCTTTCAACTCTGAGGACGGTTTCTATCTCAAAATTTTGGGACTTGATCCAAGTAAGGATGCAAACAAGA
TTACTAGTCTAGGTTTGGACCAATATACTCAAAAATTAAAAACAGCAGATGCAGAAAATACAGACGTAGCGAAACGCTAT
GAAAACTATGCAGATGCACAAGCTTGGTTGATTGATAGTTCCCTTCTAATCCCAGTTGTATCAAATGGTGGTGGTGCTTC
GGTGACACGTGTGACACCATTTACACGTGCTTACTCACTAGTTGGTATCAAAGGAACTGGAAGTAACTACAAGTACATGA
GATTGCAGACAGATGTCGTTACAAGCTCTCAATTTGCTGAAGCCAAGGCTAAATGGGAACAGGAACGTAAAAATTCTGTC
GAAAAGAGTCAAAAAGAATTTGAAAGCCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.28

100

0.528
  amiA Streptococcus salivarius strain HSISS4

51.903

100

0.523
  amiA3 Streptococcus thermophilus LMG 18311

51.824

100

0.523

Multiple sequence alignment