Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GOM46_RS06800 Genome accession   NZ_CP046525
Coordinates   1363745..1365712 (-) Length   655 a.a.
NCBI ID   WP_235083391.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1358745..1370712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS06785 (GOM46_06760) cps4B 1359253..1359984 (-) 732 WP_235083388.1 capsular polysaccharide biosynthesis protein Cps4B -
  GOM46_RS06790 (GOM46_06765) - 1359986..1361434 (-) 1449 WP_235083389.1 LCP family protein -
  GOM46_RS06795 (GOM46_06770) amiA3 1361628..1363586 (-) 1959 WP_235083390.1 peptide ABC transporter substrate-binding protein Regulator
  GOM46_RS06800 (GOM46_06775) amiA 1363745..1365712 (-) 1968 WP_235083391.1 peptide ABC transporter substrate-binding protein Regulator
  GOM46_RS06805 (GOM46_06780) - 1365881..1367491 (-) 1611 WP_235083392.1 glycoside hydrolase family 13 protein -
  GOM46_RS06810 - 1367643..1368431 (+) 789 Protein_1322 DUF1846 domain-containing protein -
  GOM46_RS08455 - 1368894..1369037 (+) 144 WP_414930186.1 hypothetical protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72543.16 Da        Isoelectric Point: 5.0045

>NTDB_id=405084 GOM46_RS06800 WP_235083391.1 1363745..1365712(-) (amiA) [Streptococcus infantis strain SO]
MKSKKWLAIAGITMSAALLLAACNKAEKKADAPTTFSYVYAIDPTTLDYSITSKSSTSDVIANLVDGLLENDKYGNLIPS
LAEDWSVSQDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLTLIQDSIKGLAEYVSGETNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSQGKDYGAAAPSGILYNGPYILKNFTSKSVIEYEKNPNYWDK
DNVKIDHVKLTFYDGSDQESLIRSFASGSYTTARLFPTSSSFDSTKKEYGDKIVYSPQEATSYYFTFNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQAINFALDRHAYSAQMNGEEGADKIIRTSLVPYDYVQVGEKTFGELAQEQLVTYGDQWKDVA
LTDGKDTLYNPTKAKAAFEKAKTELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSVEAALGSENVVIDVLQMTDNEKM
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITKGKDPEVMAQVGLDEYKKLLDDAASETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDIVTAKEYEEALKKWQKEKI
ETNAKYQKELANHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=405084 GOM46_RS06800 WP_235083391.1 1363745..1365712(-) (amiA) [Streptococcus infantis strain SO]
ATGAAATCGAAAAAGTGGCTTGCAATAGCAGGGATAACGATGAGCGCAGCTCTACTTTTAGCGGCTTGTAACAAGGCTGA
GAAAAAAGCAGATGCTCCGACAACATTTTCATACGTATATGCCATCGATCCGACAACATTGGACTATAGCATTACTAGTA
AAAGTTCAACATCAGACGTCATCGCCAACTTGGTCGACGGACTCTTGGAAAATGACAAATACGGGAACTTGATTCCGTCG
CTTGCCGAAGATTGGTCAGTCTCACAAGACGGCTTGACTTATACTTACAAGTTACGTAAAGGTGTCAAATGGTATACTTC
TGAAGGAGAAGAGTACGCTGAAGTCAAGGCCCAAGACTTTGTGACTGGCTTGAAGCATGCTGCAGATGGGAAATCAGATG
GTTTAACACTTATCCAAGACTCTATCAAAGGTTTGGCAGAGTATGTTAGCGGTGAGACAAATGACTTCTCAACAGTCGGT
GTCAAAGCAGTTGACGATTATACAGTTGAGTATACCTTGAACAAGCCAGAAAGTTTCTGGAATTCTAAGGTGACAACGGC
TACCATGCTCCCGGTTAATGAAGAATTCCTTAATTCTCAAGGGAAGGATTACGGAGCAGCAGCTCCTTCAGGTATTCTCT
ACAACGGTCCATATATTTTGAAGAACTTCACTTCAAAATCAGTGATTGAGTACGAAAAGAATCCAAACTACTGGGACAAG
GACAATGTTAAGATTGACCACGTCAAATTGACTTTCTACGACGGTTCTGACCAAGAATCATTGATCCGTAGCTTTGCATC
AGGTTCCTATACAACAGCTCGCCTCTTCCCAACTAGTTCAAGTTTTGACTCAACTAAGAAAGAATACGGCGATAAGATTG
TTTATAGTCCTCAAGAAGCGACAAGCTATTACTTTACTTTCAACGTAAATCGTCAGTCTTATAATAAAACAGCCAAGACA
GATGAAGCACAAAAAACTTCAACTAAAGAAGCCCTTCTCAATAAAAACTTCCGTCAAGCTATCAACTTTGCTCTAGACCG
TCATGCCTACTCTGCACAGATGAATGGTGAAGAAGGTGCAGACAAGATTATCCGTACTAGCCTTGTGCCTTATGACTATG
TACAGGTTGGTGAAAAGACCTTCGGTGAATTGGCGCAAGAACAATTGGTAACATACGGAGATCAATGGAAAGATGTTGCT
TTGACAGATGGTAAGGATACTCTTTACAATCCAACAAAAGCAAAGGCTGCCTTTGAAAAAGCAAAAACAGAATTGCAAGC
CAAAGGTGTAACCTTCCCAATTCATTTGGATATTCCAGTTGAACAGACAGATGTTATTGCTGTGCAACAAACCAACTCTC
TCAAACAGTCTGTCGAAGCAGCGCTTGGAAGTGAAAATGTTGTTATCGATGTACTTCAAATGACTGACAATGAGAAAATG
AGTATCACATCTCAAGCCAAAGTGCCTTCTCAAAAAGACTATGACTTGAATGGAACTGGATGGGGGCCGGACTATCAAGA
CCCAGCAACCTACCTCAATATCCTAGATGCCAAGAAGGGTTCTGCTCTTAAACACTTGGGTATTACAAAAGGTAAAGATC
CAGAAGTCATGGCTCAAGTTGGACTTGATGAGTACAAGAAACTCTTGGATGATGCAGCGTCAGAAACGAGCGACCTCAAC
AAACGCTATGAAAAATATGCCAAAGCACAAGCTTGGGTTTCAGATAGCTCACTTCTTATCCCTGTAGCTTCTTCAGGTGG
TTCTCCGACAGTTAGCCGTACAGTGCCATTCACAAAAGCATACTCTCAAGTTGGTATCAAGGGAGATCCATTTGTATTCA
AAGGCTTAGAATTGCAAAATGATATTGTAACTGCTAAAGAATACGAAGAAGCTCTCAAGAAATGGCAAAAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAGCTAGCAAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.559

100

0.548
  amiA3 Streptococcus thermophilus LMD-9

53.566

100

0.539
  amiA3 Streptococcus thermophilus LMG 18311

53.111

100

0.534

Multiple sequence alignment