Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GOM46_RS03640 Genome accession   NZ_CP046525
Coordinates   733785..734741 (+) Length   318 a.a.
NCBI ID   WP_235084076.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 728785..739741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS03625 (GOM46_03605) smpB 731026..731493 (+) 468 WP_235084073.1 SsrA-binding protein SmpB -
  GOM46_RS03630 (GOM46_03610) tehB 731508..732368 (+) 861 WP_235084074.1 SAM-dependent methyltransferase TehB -
  GOM46_RS03635 (GOM46_03615) - 732555..733703 (+) 1149 WP_235084075.1 Card1-like endonuclease domain-containing protein -
  GOM46_RS03640 (GOM46_03620) coiA 733785..734741 (+) 957 WP_235084076.1 competence protein CoiA Machinery gene
  GOM46_RS03645 (GOM46_03625) pepF 734760..736562 (+) 1803 WP_235084077.1 oligoendopeptidase F Regulator
  GOM46_RS03650 (GOM46_03630) - 736564..737277 (+) 714 WP_235084078.1 O-methyltransferase -
  GOM46_RS03655 (GOM46_03635) prsA 737351..738292 (+) 942 WP_235084079.1 peptidylprolyl isomerase PrsA -
  GOM46_RS03660 (GOM46_03640) ftsW 738497..739708 (+) 1212 WP_235084080.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 38778.62 Da        Isoelectric Point: 9.5829

>NTDB_id=405065 GOM46_RS03640 WP_235084076.1 733785..734741(+) (coiA) [Streptococcus infantis strain SO]
MFLARDKNGNLISALGDEVKKQTYYCPACGARVRLRKGKNVRTHFAHESLKKCDFFHENEGPEHLENKEQLFYWAKKNDE
VEMEYPIPELKQIADIFINKQLALEVQCSPISCELLRERSNGYQSLGIQVLWLLGEKLWIKERLTQLQRDFLYFSHNMGF
HLWELDHKRRVLRLKYLLHQDLKGKLHYQVKEFSYCKGNLLEILRTPYQQQNLISFSVEQDRNICYYIQKQLYYQNRYWM
KQQAQAYLRGENLLNRKKQDWYPQVRPIEKGYFCQIKQDLHDYYRNFQAYYEKNSQNKQQKLYPPVFYQRYFLKNMVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=405065 GOM46_RS03640 WP_235084076.1 733785..734741(+) (coiA) [Streptococcus infantis strain SO]
ATGTTTCTAGCGAGGGATAAAAATGGGAATTTAATTAGCGCTTTAGGGGATGAAGTAAAGAAACAAACTTATTATTGCCC
AGCTTGTGGAGCACGTGTTCGCTTGAGAAAAGGGAAAAATGTACGAACGCATTTTGCTCATGAAAGTCTAAAAAAATGTG
ATTTTTTCCATGAAAATGAAGGACCAGAACACCTGGAAAACAAGGAGCAATTGTTTTATTGGGCTAAGAAGAATGATGAG
GTTGAAATGGAATATCCGATACCTGAACTGAAGCAAATTGCTGATATCTTTATCAATAAACAACTAGCCCTAGAAGTTCA
GTGTAGCCCAATTTCTTGTGAACTTTTAAGGGAGAGAAGCAATGGTTATCAAAGTCTCGGGATTCAAGTTTTGTGGTTAC
TTGGAGAAAAACTATGGATAAAAGAGCGACTAACTCAACTTCAGAGAGATTTTCTTTATTTCAGTCATAATATGGGATTT
CATCTTTGGGAGTTAGACCATAAAAGAAGAGTTTTGAGACTTAAGTACTTACTCCACCAAGATTTGAAGGGAAAACTTCA
TTATCAGGTCAAGGAATTTTCTTATTGCAAAGGGAATCTTCTAGAAATATTACGGACTCCTTATCAACAACAAAACCTGA
TTTCTTTTTCAGTTGAGCAAGACAGGAACATCTGTTATTACATTCAAAAACAACTTTATTATCAAAATCGCTATTGGATG
AAGCAACAAGCTCAAGCCTATTTGAGAGGAGAGAATCTTTTGAATCGGAAGAAACAGGACTGGTATCCCCAAGTAAGGCC
GATAGAAAAAGGTTATTTTTGCCAAATCAAACAAGATCTTCATGATTATTATCGAAACTTTCAGGCTTATTATGAGAAAA
ATTCTCAAAATAAGCAACAAAAGCTCTATCCACCTGTCTTTTATCAGCGTTATTTCCTGAAAAATATGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

63.836

100

0.638
  coiA Streptococcus pneumoniae TIGR4

63.522

100

0.635
  coiA Streptococcus pneumoniae Rx1

63.522

100

0.635
  coiA Streptococcus pneumoniae D39

63.522

100

0.635
  coiA Streptococcus pneumoniae R6

63.522

100

0.635
  coiA Lactococcus lactis subsp. cremoris KW2

39.441

100

0.399

Multiple sequence alignment