Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GOM46_RS03645 Genome accession   NZ_CP046525
Coordinates   734760..736562 (+) Length   600 a.a.
NCBI ID   WP_235084077.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 729760..741562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS03625 (GOM46_03605) smpB 731026..731493 (+) 468 WP_235084073.1 SsrA-binding protein SmpB -
  GOM46_RS03630 (GOM46_03610) tehB 731508..732368 (+) 861 WP_235084074.1 SAM-dependent methyltransferase TehB -
  GOM46_RS03635 (GOM46_03615) - 732555..733703 (+) 1149 WP_235084075.1 Card1-like endonuclease domain-containing protein -
  GOM46_RS03640 (GOM46_03620) coiA 733785..734741 (+) 957 WP_235084076.1 competence protein CoiA Machinery gene
  GOM46_RS03645 (GOM46_03625) pepF 734760..736562 (+) 1803 WP_235084077.1 oligoendopeptidase F Regulator
  GOM46_RS03650 (GOM46_03630) - 736564..737277 (+) 714 WP_235084078.1 O-methyltransferase -
  GOM46_RS03655 (GOM46_03635) prsA 737351..738292 (+) 942 WP_235084079.1 peptidylprolyl isomerase PrsA -
  GOM46_RS03660 (GOM46_03640) ftsW 738497..739708 (+) 1212 WP_235084080.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69878.94 Da        Isoelectric Point: 4.5776

>NTDB_id=405066 GOM46_RS03645 WP_235084077.1 734760..736562(+) (pepF) [Streptococcus infantis strain SO]
MVLQRNEIDEKDTWDLSTIFETDQKWEEELALLTEDTKQAASLEGHLLDSAESLLDITERYLELSRRLEKLYVYAHMKND
QDTRVAKYQEYYAKAMALYSQLDQVFSFYEPEFMAITEEQYQNFLAEEPKLQPYKHFFDKLLQNKDHVLSQREEELLAGA
GEIFGAASETFAILDNADIVFPFVKDEDGNEVQLSHGVYMRLVESKNREVRRGAYEALYSTYEQYQHTYAKTLQTNVKVQ
NYRAKVRNYKSAREAALAANFVPESVYDNLVSAVRKHLPLLHRYLALRSKILGIPDLKMYDVYTPLSSVEYSFTYEEALK
KAEEALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLQEVQDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIEYLKAGKSDYPL
NIMRKAGVDMEKEDYLNDAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=405066 GOM46_RS03645 WP_235084077.1 734760..736562(+) (pepF) [Streptococcus infantis strain SO]
ATGGTATTACAACGAAATGAAATAGATGAAAAAGATACATGGGATTTGTCCACTATCTTTGAAACAGACCAAAAATGGGA
AGAAGAACTTGCCCTTCTAACGGAAGATACAAAACAAGCAGCTAGTCTTGAGGGACATCTCTTGGATAGTGCAGAGAGTC
TTCTTGACATTACAGAGCGTTATCTAGAATTGAGTCGTCGTCTTGAAAAACTTTATGTTTATGCACATATGAAAAACGAT
CAAGATACAAGAGTAGCTAAGTATCAAGAATACTATGCAAAAGCTATGGCTCTTTATAGTCAACTTGATCAAGTCTTTTC
ATTCTATGAGCCAGAATTTATGGCTATCACAGAAGAGCAATATCAAAACTTTCTAGCAGAAGAACCAAAACTCCAACCAT
ATAAACACTTCTTTGATAAACTATTGCAAAATAAGGACCATGTCCTTTCACAACGTGAAGAAGAGTTGCTTGCAGGTGCT
GGTGAAATCTTCGGTGCTGCTAGTGAAACCTTTGCTATTTTAGATAATGCAGATATTGTCTTTCCATTCGTTAAAGATGA
AGATGGAAATGAAGTTCAATTGTCACACGGTGTTTATATGCGCTTAGTAGAATCTAAAAATCGTGAGGTTCGTCGTGGAG
CTTATGAAGCTCTTTACTCTACCTATGAGCAATACCAGCACACTTACGCAAAAACTTTGCAGACCAATGTTAAAGTGCAA
AACTATCGTGCTAAGGTTCGTAACTACAAGAGTGCGCGTGAAGCAGCTCTTGCAGCAAACTTTGTGCCAGAAAGTGTTTA
TGACAATCTAGTATCTGCTGTTCGCAAGCATTTGCCACTCTTGCACCGTTATCTAGCTCTTCGCTCAAAAATCTTGGGTA
TTCCAGACCTCAAGATGTACGATGTCTACACTCCTTTGTCTTCAGTGGAATACAGCTTTACTTATGAGGAAGCCTTAAAG
AAAGCAGAAGAAGCTTTGGCAGTTCTTGGTGAAGATTACTTGAGTCGTGTGAAACGTGCCTTCAGCGAACGTTGGATTGA
TGTTTATGAGAATCAAGGGAAGCGATCAGGTGCTTACTCAGGTGGTTCTTATGATACCAACGCCTTTATGCTCCTCAATT
GGCAAGATAATCTAGATAATCTCTTTACTCTTGTACATGAGACAGGTCACAGTATGCATTCTAGCTATACACGTGAAACT
CAGCCTTACGTTTACGGAGATTACTCAATTTTCCTAGCTGAGATTGCTTCAACAACCAATGAAAACATCCTGACAGAAAA
ATTATTGCAAGAAGTTCAAGATGATGCAACACGCTTTGCCATTCTCAACAACTTCTTGGATGGTTTCCGTGGAACAGTAT
TCCGCCAAACTCAATTTGCAGAATTTGAACATGCCATCCACCAAGCAGATCAAAACGGTGAAGTCTTAACAAGCGAGTTC
CTAAACAAACTCTATGCAGACTTGAACCAAGAATACTATGGTTTGAGCAAAGAAGATAATCCACAAATCCAGTACGAGTG
GGCTCGAATTCCTCATTTCTACTATAATTACTATGTATATCAATATTCAACTGGTTTTGCAGCAGCTTCAGCCTTGGCTG
AAAAGATTGTTCATGGTAGCCAAGAGGATCGTGACCGTTATATTGAATACCTGAAGGCTGGGAAGTCAGACTATCCACTC
AACATCATGCGTAAAGCTGGTGTTGACATGGAAAAAGAAGATTATCTCAACGATGCCTTTGCAGTCTTTGAACGTCGTTT
GGATGAGTTTGAAGCCCTTGTTGAAAAATTAGGATTAGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.785

99.333

0.673

Multiple sequence alignment