Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GOM47_RS05885 Genome accession   NZ_CP046524
Coordinates   1157506..1158462 (-) Length   318 a.a.
NCBI ID   WP_235080158.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1152506..1163462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS05865 (GOM47_05870) ftsW 1152543..1153766 (-) 1224 WP_235080154.1 cell division peptidoglycan polymerase FtsW -
  GOM47_RS05870 (GOM47_05875) prsA 1153957..1154904 (-) 948 WP_235080155.1 peptidylprolyl isomerase PrsA -
  GOM47_RS05875 (GOM47_05880) - 1154970..1155683 (-) 714 WP_235080156.1 O-methyltransferase -
  GOM47_RS05880 (GOM47_05885) pepF 1155685..1157487 (-) 1803 WP_235080157.1 oligoendopeptidase F Regulator
  GOM47_RS05885 (GOM47_05890) coiA 1157506..1158462 (-) 957 WP_235080158.1 competence protein CoiA Machinery gene
  GOM47_RS05890 (GOM47_05895) - 1158539..1159687 (-) 1149 WP_235081281.1 hypothetical protein -
  GOM47_RS05895 (GOM47_05900) tehB 1159879..1160739 (-) 861 WP_235080159.1 SAM-dependent methyltransferase TehB -
  GOM47_RS05900 (GOM47_05905) smpB 1160753..1161220 (-) 468 WP_001051743.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37704.16 Da        Isoelectric Point: 9.4819

>NTDB_id=404994 GOM47_RS05885 WP_235080158.1 1157506..1158462(-) (coiA) [Streptococcus oralis strain SOT]
MFVARDAQGKLVNALEKDVSKQAYTCPACGGGLRLRQGQSIRTHFAHERLRDCIAIFENESPEHLGNKEALYHWAKKDNQ
VALEYSLPEIQQIADVLVNGKLALEVQCSPLSQKLLGDRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRVFLYFSQNMGF
YVWELDLKKQVLRLKYLLHQDLRGKLHFQVKEFSYGQGNLLEILRFPYQKQRLSGFTVSQDPTICHYILQQLYYQTPYWM
KKQEEAYKRGDNLLNRQLDDWYPQVRPIESGDFCQINQDLTSYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=404994 GOM47_RS05885 WP_235080158.1 1157506..1158462(-) (coiA) [Streptococcus oralis strain SOT]
ATGTTTGTAGCCAGAGATGCACAGGGGAAATTGGTGAATGCCCTCGAAAAAGATGTTAGCAAGCAAGCTTATACTTGTCC
AGCCTGTGGTGGTGGACTACGATTACGTCAGGGACAGAGTATTCGAACGCACTTTGCCCATGAAAGGTTAAGAGATTGTA
TTGCCATTTTTGAAAATGAAAGTCCAGAACACTTGGGCAACAAAGAGGCCCTTTATCACTGGGCCAAGAAGGACAATCAG
GTGGCCTTAGAATATAGTTTGCCCGAGATTCAGCAGATAGCAGATGTTCTCGTCAATGGGAAACTAGCTCTGGAGGTTCA
GTGCAGTCCCTTGTCTCAAAAACTTTTAGGCGATAGAAGTCAAGGCTACCGTAGTCAGGGCTACCAAGTTATCTGGCTAC
TGGGAGAAAAGCTCTGGTTAAAAGAGCGATTAACACAACTGCAAAGGGTATTCCTCTATTTTAGTCAAAATATGGGTTTC
TATGTTTGGGAACTAGATCTCAAAAAGCAAGTTTTGAGACTCAAATATCTTCTGCATCAGGACCTACGTGGCAAGCTTCA
TTTTCAGGTCAAGGAATTTTCCTATGGTCAAGGAAATCTCTTGGAAATTTTACGATTTCCTTATCAAAAACAAAGGCTGT
CTGGTTTTACAGTTTCTCAAGATCCAACTATCTGTCACTACATTCTCCAACAGTTGTACTACCAAACGCCTTACTGGATG
AAAAAACAGGAGGAGGCTTATAAACGAGGTGACAATCTATTAAACCGTCAACTGGACGACTGGTATCCCCAAGTCAGACC
AATAGAATCAGGAGATTTTTGTCAAATTAATCAAGATTTGACTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

72.013

100

0.72
  coiA Streptococcus pneumoniae D39

72.013

100

0.72
  coiA Streptococcus pneumoniae R6

72.013

100

0.72
  coiA Streptococcus mitis NCTC 12261

72.013

100

0.72
  coiA Streptococcus pneumoniae TIGR4

71.698

100

0.717
  coiA Lactococcus lactis subsp. cremoris KW2

40.741

100

0.415

Multiple sequence alignment