Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   B18_RS04330 Genome accession   NZ_CP058332
Coordinates   963983..966826 (+) Length   947 a.a.
NCBI ID   WP_023109609.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain B18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 958983..971826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B18_RS04305 (B18_04290) pchC 959291..960046 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  B18_RS04310 (B18_04295) pchB 960046..960351 (+) 306 WP_179118905.1 isochorismate lyase PchB -
  B18_RS04315 (B18_04300) pchA 960348..961778 (+) 1431 WP_003118152.1 isochorismate synthase PchA -
  B18_RS04320 (B18_04305) ssb 961867..962364 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  B18_RS04325 (B18_04310) - 962381..963769 (-) 1389 WP_009316331.1 MFS transporter -
  B18_RS04330 (B18_04315) uvrA 963983..966826 (+) 2844 WP_023109609.1 excinuclease ABC subunit UvrA Machinery gene
  B18_RS04335 (B18_04320) bfr 966898..967362 (-) 465 WP_023109608.1 bacterioferritin -
  B18_RS04340 (B18_04325) katA 967493..968941 (-) 1449 WP_023109607.1 catalase KatA -
  B18_RS04345 (B18_04330) rplQ 969223..969612 (-) 390 WP_003093672.1 50S ribosomal protein L17 -
  B18_RS04350 (B18_04335) rpoA 969656..970657 (-) 1002 WP_003093675.1 DNA-directed RNA polymerase subunit alpha -
  B18_RS04355 (B18_04340) rpsD 970680..971300 (-) 621 WP_003093678.1 30S ribosomal protein S4 -
  B18_RS04360 (B18_04345) rpsK 971317..971706 (-) 390 WP_003093689.1 30S ribosomal protein S11 -

Sequence

Protein


Download         Length: 947 a.a.        Molecular weight: 104763.36 Da        Isoelectric Point: 6.4808

>NTDB_id=404994 B18_RS04330 WP_023109609.1 963983..966826(+) (uvrA) [Pseudomonas aeruginosa strain B18]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALVAPMDED
EDEDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYF
QMLGSLAQHYGFSLEEPFDELGTEHQKVVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELA
KFLSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYL
TLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVV
DIGPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCI
TGVSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGV
PEARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEARE
FFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRL
RDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMPQSHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2844 bp        

>NTDB_id=404994 B18_RS04330 WP_023109609.1 963983..966826(+) (uvrA) [Pseudomonas aeruginosa strain B18]
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT
CGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAAGGCCAGCGGCGCTACG
TGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGACGTGGACACCATCGAAGGGCTATCG
CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA
CCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTCCTGGCCCTGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGTTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGA
CGAAGTGCCGAAGCTGGATAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCC
AGCAACGCCTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC
GAGGACGAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCGATCAGCGAGCTGGA
ACCCAAGCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCGGCGTGAAGCAATTCTTCGACG
CGCGCCGGGTGGTCAATGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTC
CAGATGCTCGGCTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTCGACGAACTCGGCACCGAGCACCAGAA
GGTGGTGCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTATCTCAACGACCGCGGCGACATCGTCAAGCGTTCGC
ATCCCTTCGAAGGCATCCTGCCGAACCTTGAGCGGCGCTACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCC
AAGTTCCTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGA
CCGGACGCTGCCGGCGATCACCGCGATGCCGGTCGGCGAGGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCC
GTGGCGAGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTG
ACCCTCGACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCT
GGTGGGAGTGATGTACATCCTCGACGAACCCTCGATCGGCCTGCACCAACGCGACAACGAACGCCTGCTCGGCACCCTCA
CCCACCTGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGACTCGCCGACTACGTCGTC
GACATCGGTCCGGGCGCCGGTGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGA
CTCGCTGACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTTCCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGC
TGCTGAAGCTGAAAGGCGCCCGCGGCAACAACCTGCAGAACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATC
ACCGGGGTCTCGGGCTCCGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGC
GACTACCCTGGAAGTGGCGCCGTACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCC
CGATCGGTCGTACCCCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTCTCCGGCGTG
CCGGAGGCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGG
CGACGGCGTGATCAAGGTGGAGATGCACTTCCTGCCGGACATCTACGTTCCCTGCGACGTCTGCAAGGGCAAGCGCTACA
ACCGCGAGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAGGTGCTGGAGATGACCATCGAGGAAGCCCGCGAG
TTCTTCGACGCCGTCCCCGCCCTGGCGCGCAAGCTGCAGACACTGATGGACGTCGGCCTGTCCTACATCAAGCTGGGCCA
GAGCGCGACCACCCTCTCGGGCGGCGAGGCACAGCGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGCGATACCGGCAAGA
CCCTGTACATCCTCGACGAACCGACCACCGGCCTGCATTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTG
CGCGACCACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGG
CCCCGAGGGCGGCTCCAAGGGTGGCCAGATCATCGCCAACGGTACGCCGGAGCAGGTGGCCGAGATGCCCCAGTCGCACA
CCGGCCACTTCCTCAAGCCGCTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(293-401)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.113

100

0.572
  uvrA Streptococcus pneumoniae TIGR4

57.113

100

0.572
  uvrA Streptococcus pneumoniae D39

57.113

100

0.572

Multiple sequence alignment