Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GOM47_RS05880 Genome accession   NZ_CP046524
Coordinates   1155685..1157487 (-) Length   600 a.a.
NCBI ID   WP_235080157.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1150685..1162487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS05865 (GOM47_05870) ftsW 1152543..1153766 (-) 1224 WP_235080154.1 cell division peptidoglycan polymerase FtsW -
  GOM47_RS05870 (GOM47_05875) prsA 1153957..1154904 (-) 948 WP_235080155.1 peptidylprolyl isomerase PrsA -
  GOM47_RS05875 (GOM47_05880) - 1154970..1155683 (-) 714 WP_235080156.1 O-methyltransferase -
  GOM47_RS05880 (GOM47_05885) pepF 1155685..1157487 (-) 1803 WP_235080157.1 oligoendopeptidase F Regulator
  GOM47_RS05885 (GOM47_05890) coiA 1157506..1158462 (-) 957 WP_235080158.1 competence protein CoiA Machinery gene
  GOM47_RS05890 (GOM47_05895) - 1158539..1159687 (-) 1149 WP_235081281.1 hypothetical protein -
  GOM47_RS05895 (GOM47_05900) tehB 1159879..1160739 (-) 861 WP_235080159.1 SAM-dependent methyltransferase TehB -
  GOM47_RS05900 (GOM47_05905) smpB 1160753..1161220 (-) 468 WP_001051743.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69820.86 Da        Isoelectric Point: 4.6225

>NTDB_id=404993 GOM47_RS05880 WP_235080157.1 1155685..1157487(-) (pepF) [Streptococcus oralis strain SOT]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTAAQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGAASEIFAILDNADISFPYVLDDEGKEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLNLRSKILGISDLKMYDVYTPLSSVEYSFTYEEALK
KAEEALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDAIRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFSAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=404993 GOM47_RS05880 WP_235080157.1 1155685..1157487(-) (pepF) [Streptococcus oralis strain SOT]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCGACAATCTACCCAACAGATCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCTGCCCAGTATGAGGGGCATCTCTTGGATAGCGCAGACAGTT
TGCTTGAGATTACTGAATTCTCACTTGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTATGCACATATGAAAAATGAT
CAGGACACGCGTGAAGCCAAGTATCAAGAATACTATGCTAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCCGAGTTTATGGAGATTAGCGAAGAGCAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAACACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTGCTTGCTGGAGCA
GGAGAAATCTTTGGCGCTGCTAGTGAAATCTTCGCTATTTTGGACAATGCGGATATTAGCTTCCCATATGTCCTTGATGA
TGAAGGCAAGGAAGTGCAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGCCGTGGTG
CCTATGAAGCCCTCTATGCGACTTATGAGCAATTCCAGCATACTTACGCTAAGACTTTGCAGACAAATGTTAAAGTGCAA
AACTACCGAGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTCGCAGCAAACTTTGTTCCAGAAAGTGTCTA
TGACAATCTAGTAGCAGCAGTTCGTAAGCACTTGCCACTCTTGCATCGATACCTTAACCTTCGTTCTAAAATCTTGGGGA
TTTCTGATCTCAAGATGTACGATGTCTACACACCACTGTCTTCAGTAGAATACAGCTTTACTTATGAGGAAGCCTTGAAA
AAGGCGGAAGAAGCTTTGGCAGTTTTGGGTGAGGATTACTTAAGCCGCGTTAAACGCGCATTTAGTGAGCGTTGGATTGA
TGTCTATGAAAACCAAGGAAAGCGTTCTGGTGCCTACTCTGGTGGTTCTTATGATACCAATGCCTTCATGCTTCTCAACT
GGCAGGACAATTTAGACAATCTCTTTACCCTTGTACACGAAACAGGTCACAGTATGCACTCAAGCTATACTCGTGAAACT
CAGCCTTATGTTTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCCTCAACGACCAATGAAAATATCTTGACAGAAAA
ATTGTTGGAAGAAGTGGAAGACGATGCAATTCGCTTTGCTATTCTCAATAACTTCCTAGACGGTTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCTATCCACCAAGCAGACCAAAATGGAGAAGTCTTGACCAGTGATTTC
CTCAATAAACTCTACGCTGACTTGAACCAAGAGTACTATGGACTCAGCAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCACGCATACCACACTTCTACTATAACTACTATGTTTATCAGTATTCGACTGGTTTTTCAGCTGCTTCAGCCTTGGCTG
AAAAGATTGTCCATGGAAGTCAAGAAGATCGTGACCGCTATATCGACTACCTCAAGGCTGGTAAGTCTGATTATCCGCTC
AATGTTATGAGAAAAGCGGGTGTTGATATGGAAAAAGAAGACTATCTTAACGATGCCTTTGCAGTCTTTGAACGTCGCTT
GAACGAGTTTGAAGCCCTTGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.114

99.333

0.667

Multiple sequence alignment