Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   GOM48_RS09575 Genome accession   NZ_CP046523
Coordinates   1905682..1906344 (-) Length   220 a.a.
NCBI ID   WP_235097549.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1900682..1911344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS09555 (GOM48_09490) rplI 1901213..1901665 (-) 453 WP_000864206.1 50S ribosomal protein L9 -
  GOM48_RS09560 (GOM48_09495) - 1901662..1903635 (-) 1974 WP_235097547.1 DHH family phosphoesterase -
  GOM48_RS09565 (GOM48_09500) - 1903787..1904965 (-) 1179 WP_235098772.1 acetyl-CoA C-acetyltransferase -
  GOM48_RS09570 (GOM48_09505) hpf 1905054..1905602 (-) 549 WP_000599119.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GOM48_RS09575 (GOM48_09510) comFC/cflB 1905682..1906344 (-) 663 WP_235097549.1 ComF family protein Machinery gene
  GOM48_RS09580 (GOM48_09515) comFA/cflA 1906341..1907639 (-) 1299 WP_235097551.1 DEAD/DEAH box helicase Machinery gene
  GOM48_RS09585 (GOM48_09520) - 1907696..1908331 (+) 636 WP_235097553.1 YigZ family protein -
  GOM48_RS09590 (GOM48_09525) - 1908346..1908789 (+) 444 WP_235097555.1 PH domain-containing protein -
  GOM48_RS09595 (GOM48_09530) cysK 1908886..1909812 (+) 927 WP_235097557.1 cysteine synthase A -
  GOM48_RS09600 (GOM48_09535) tsf 1909927..1910967 (-) 1041 WP_235097559.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25329.14 Da        Isoelectric Point: 6.8144

>NTDB_id=404950 GOM48_RS09575 WP_235097549.1 1905682..1906344(-) (comFC/cflB) [Streptococcus oralis strain SOD]
MNCLLCGQSTKSDLTFSHLLLFKNEHNYLCSACDSTFEKIGEDHCPNCMKRGLSTTCQDCKLWCEDGIQVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFTPVLADELKKYRDYEFVVIPLSPERLLERGFNQVEGLVETAGFSFQDLLGKREEKASSS
KNRSERLATEIPFYIKTEAPLPKKILVIDDIYTTGATINRVKRLFEEVGVLEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=404950 GOM48_RS09575 WP_235097549.1 1905682..1906344(-) (comFC/cflB) [Streptococcus oralis strain SOD]
ATGAATTGTTTATTATGTGGCCAGTCAACAAAGAGTGACTTGACATTTAGTCACCTCTTACTGTTTAAGAATGAGCACAA
CTATCTTTGCTCAGCTTGTGATTCTACTTTTGAGAAGATTGGTGAAGACCATTGTCCAAACTGCATGAAAAGAGGGTTGT
CAACAACGTGTCAAGATTGTAAACTTTGGTGTGAAGATGGGATTCAAGTTGATCATAAAGCAATCTTCACCTATAATCAA
GCTATGAAAGACTTCTTTAGTCGATATAAGTTTGATGGGGATTTTCTGCTTAGAAAGGTTTTTACTCCTGTACTTGCAGA
TGAGTTGAAAAAGTATAGAGACTATGAATTTGTGGTAATTCCCCTAAGTCCTGAAAGATTGCTTGAGAGAGGATTTAATC
AGGTTGAAGGTTTGGTTGAGACGGCAGGATTTTCCTTTCAAGATTTACTAGGGAAAAGAGAAGAGAAGGCTAGTTCTTCT
AAGAATCGCTCAGAACGATTAGCTACGGAAATTCCCTTTTATATTAAAACGGAAGCCCCTCTTCCTAAGAAGATTTTGGT
TATTGATGACATCTATACGACAGGGGCGACTATCAATCGTGTGAAGCGACTTTTTGAAGAGGTAGGTGTTTTGGAAGTCA
AAACTTTTTCTCTTGTAAGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(164-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

74.545

100

0.745
  comFC/cflB Streptococcus mitis NCTC 12261

73.636

100

0.736
  comFC/cflB Streptococcus pneumoniae TIGR4

73.182

100

0.732
  comFC/cflB Streptococcus pneumoniae Rx1

73.182

100

0.732
  comFC/cflB Streptococcus pneumoniae D39

73.182

100

0.732
  comFC/cflB Streptococcus pneumoniae R6

73.182

100

0.732

Multiple sequence alignment