Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GOM48_RS06000 Genome accession   NZ_CP046523
Coordinates   1185703..1186659 (-) Length   318 a.a.
NCBI ID   WP_084947818.1    Uniprot ID   A0A1X1J8D3
Organism   Streptococcus oralis strain SOD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1180703..1191659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS05980 (GOM48_05975) ftsW 1180748..1181971 (-) 1224 WP_061416713.1 cell division peptidoglycan polymerase FtsW -
  GOM48_RS05985 (GOM48_05980) prsA 1182160..1183101 (-) 942 WP_235096428.1 peptidylprolyl isomerase PrsA -
  GOM48_RS05990 (GOM48_05985) - 1183167..1183880 (-) 714 WP_235096429.1 O-methyltransferase -
  GOM48_RS05995 (GOM48_05990) pepF 1183882..1185684 (-) 1803 WP_235096430.1 oligoendopeptidase F Regulator
  GOM48_RS06000 (GOM48_05995) coiA 1185703..1186659 (-) 957 WP_084947818.1 competence protein CoiA Machinery gene
  GOM48_RS06005 (GOM48_06000) - 1186734..1187882 (-) 1149 WP_235098749.1 Card1-like endonuclease domain-containing protein -
  GOM48_RS06010 (GOM48_06005) tehB 1188059..1188919 (-) 861 WP_235096431.1 SAM-dependent methyltransferase TehB -
  GOM48_RS06015 (GOM48_06010) smpB 1188934..1189401 (-) 468 WP_001051743.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37791.36 Da        Isoelectric Point: 9.6430

>NTDB_id=404922 GOM48_RS06000 WP_084947818.1 1185703..1186659(-) (coiA) [Streptococcus oralis strain SOD]
MFVARDVKGKLVNALEKDVTKQAYTCPSCGGGLRLRQGQSIRTHFAHERLRDCIAIFENESPEHLGNKEALYHWAKKDNQ
VSLEYSLPEIQQIADVLVNEKLALEVQCSPLSQKLLGGRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
YVWELDLKKQVLRLKYLLHQDLRGKLHFQVKEFPFGQGNLLEILRFPYQKQKLPRFEVVQDSTICHYIRQQLYYQTPYWM
KKQEEAYHQGDNLLNRQLGDWYPQVRPIASGDFLQIETDLTSYYRNFQTYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=404922 GOM48_RS06000 WP_084947818.1 1185703..1186659(-) (coiA) [Streptococcus oralis strain SOD]
ATGTTTGTAGCCAGAGATGTCAAGGGAAAATTGGTGAATGCCCTCGAAAAAGATGTGACCAAGCAAGCTTATACTTGTCC
AAGCTGTGGTGGTGGACTACGATTACGACAAGGACAGAGTATTCGAACGCATTTTGCCCATGAAAGGTTAAGAGATTGTA
TCGCTATTTTTGAAAATGAAAGTCCAGAACACTTGGGCAACAAAGAGGCCCTTTATCACTGGGCCAAGAAGGACAATCAA
GTCTCCTTAGAGTATAGTCTACCCGAGATTCAGCAGATAGCGGATGTTCTCGTCAATGAGAAACTAGCTCTGGAGGTTCA
GTGCAGTCCCTTGTCTCAAAAGCTTTTAGGCGGTAGAAGCCAAGGATACCGCAGTCAGGGCTACCAAGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAAGAGCGACTTACACAACTGCAAAGGGGATTTCTCTATTTTAGTCAAAATATGGGTTTC
TATGTTTGGGAACTGGATCTCAAAAAGCAAGTTCTGAGACTAAAATACCTTTTACATCAGGACCTACGTGGCAAGCTTCA
TTTTCAGGTCAAGGAATTTCCCTTTGGCCAAGGAAATCTCTTGGAAATTCTAAGATTTCCTTATCAGAAACAAAAACTGC
CTCGTTTTGAAGTTGTACAAGATTCCACTATCTGTCACTACATTCGCCAGCAGTTGTACTACCAAACACCTTACTGGATG
AAGAAACAGGAGGAAGCCTATCATCAAGGAGACAATCTATTAAACCGTCAACTAGGCGACTGGTATCCCCAGGTCAGACC
GATAGCATCAGGTGATTTTTTACAGATTGAAACGGATTTGACTAGCTATTATAGAAATTTTCAGACTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(16-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1J8D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

71.069

100

0.711
  coiA Streptococcus pneumoniae Rx1

70.755

100

0.708
  coiA Streptococcus pneumoniae D39

70.755

100

0.708
  coiA Streptococcus pneumoniae R6

70.755

100

0.708
  coiA Streptococcus pneumoniae TIGR4

70.44

100

0.704
  coiA Lactococcus lactis subsp. cremoris KW2

42.769

100

0.437

Multiple sequence alignment