Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GOM48_RS05995 Genome accession   NZ_CP046523
Coordinates   1183882..1185684 (-) Length   600 a.a.
NCBI ID   WP_235096430.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1178882..1190684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS05980 (GOM48_05975) ftsW 1180748..1181971 (-) 1224 WP_061416713.1 cell division peptidoglycan polymerase FtsW -
  GOM48_RS05985 (GOM48_05980) prsA 1182160..1183101 (-) 942 WP_235096428.1 peptidylprolyl isomerase PrsA -
  GOM48_RS05990 (GOM48_05985) - 1183167..1183880 (-) 714 WP_235096429.1 O-methyltransferase -
  GOM48_RS05995 (GOM48_05990) pepF 1183882..1185684 (-) 1803 WP_235096430.1 oligoendopeptidase F Regulator
  GOM48_RS06000 (GOM48_05995) coiA 1185703..1186659 (-) 957 WP_084947818.1 competence protein CoiA Machinery gene
  GOM48_RS06005 (GOM48_06000) - 1186734..1187882 (-) 1149 WP_235098749.1 Card1-like endonuclease domain-containing protein -
  GOM48_RS06010 (GOM48_06005) tehB 1188059..1188919 (-) 861 WP_235096431.1 SAM-dependent methyltransferase TehB -
  GOM48_RS06015 (GOM48_06010) smpB 1188934..1189401 (-) 468 WP_001051743.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69695.60 Da        Isoelectric Point: 4.5731

>NTDB_id=404921 GOM48_RS05995 WP_235096430.1 1183882..1185684(-) (pepF) [Streptococcus oralis strain SOD]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTAAQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGAASETFAILDNADISFPYVLDDEGNEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVDYSFTYEEALK
KAEEALAVLGDDYLSRVKRAFGERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMKKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=404921 GOM48_RS05995 WP_235096430.1 1183882..1185684(-) (pepF) [Streptococcus oralis strain SOD]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCGACAATCTACCCAACAGATCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCAGCCCAGTATGAGGGGCATCTCTTGGACAGCGCAGACAGTT
TGCTTGAGATTACAGAATTCTCACTTGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTACGCGCATATGAAAAATGAC
CAGGACACGCGTGAAGCCAAGTATCAAGAGTACTATGCCAAGGCTATGACCCTGTACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGCGAAGAGCAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAGCACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTGCTTGCTGGCGCA
GGAGAAATCTTTGGCGCTGCTAGTGAAACCTTCGCTATTTTGGACAATGCGGATATTAGCTTCCCATATGTCCTTGATGA
CGAAGGCAATGAAGTGCAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGTCGTGGAG
CCTATGAAGCCCTCTATGCGACTTATGAGCAATTCCAACACACTTATGCTAAGACTTTGCAGACAAATGTTAAGGTGCAA
AACTACCGTGCCAAAGTTCGCAACTATAAGAGTGCTCGTCATGCAGCCCTCGCAGCAAACTTTGTTCCAGAAAGTGTCTA
TGACAATCTAGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGATACCTAGAACTTCGTTCTAAAATCTTGGGTA
TTTCTGATCTCAAGATGTACGATGTCTACACACCACTTTCGTCAGTAGATTATAGCTTTACCTACGAAGAAGCCTTGAAA
AAGGCAGAAGAAGCTTTGGCAGTTTTAGGTGACGACTACTTGAGCCGTGTCAAACGTGCTTTCGGAGAGCGCTGGATTGA
TGTCTATGAAAATCAAGGCAAGCGTTCTGGTGCCTACTCTGGTGGTTCTTATGATACCAATGCCTTTATGCTTCTCAATT
GGCAGGACAATCTAGACAATCTCTTTACCCTTGTCCATGAAACAGGTCACAGTATGCATTCTAGCTATACTCGTGAAACC
CAACCTTATGTTTACGGAGATTACTCCATTTTCTTGGCTGAGATTGCCTCAACCACAAACGAAAATATCTTGACAGAGAA
ATTATTGGAGGAAGTGGAAGACGATGCAACTCGCTTTGCTATTCTCAATAACTTCCTAGATGGTTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCCATCCACCAAGCAGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTCAATAAACTCTACGCTGACTTGAACCAAGAGTACTATGGACTCAGCAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCGCGCATTCCACATTTCTACTATAACTACTATGTTTATCAATATTCAACTGGTTTTGCAGCTGCTTCAGCCTTGGCTG
AAAAGATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATCGACTATCTCAAAGCAGGCAAGTCAGACTATCCACTC
AATGTCATGAAAAAAGCGGGTGTTGATATGGAGAAGGAAGACTACCTCAACGACGCCTTTGCAGTCTTTGAACGTCGCTT
GAACGAGTTTGAAGCCCTAGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.45

99.333

0.67

Multiple sequence alignment