Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GNX71_RS01260 Genome accession   NZ_CP046508
Coordinates   275632..277176 (-) Length   514 a.a.
NCBI ID   WP_206176644.1    Uniprot ID   -
Organism   Variovorax sp. RKNM96     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 270632..282176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX71_RS01260 (GNX71_01250) comM 275632..277176 (-) 1545 WP_206176644.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GNX71_RS01265 (GNX71_01255) - 277398..278261 (+) 864 WP_206176645.1 TorF family putative porin -
  GNX71_RS01270 (GNX71_01260) glnK 278327..278665 (+) 339 WP_007833403.1 P-II family nitrogen regulator -
  GNX71_RS01275 (GNX71_01265) amt 278694..280235 (+) 1542 WP_206176646.1 ammonium transporter -
  GNX71_RS01280 (GNX71_01270) - 280425..281357 (+) 933 WP_206176647.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54256.93 Da        Isoelectric Point: 7.1911

>NTDB_id=404764 GNX71_RS01260 WP_206176644.1 275632..277176(-) (comM) [Variovorax sp. RKNM96]
MSLSLVQSRALLGLEAADVTVEVHLANGLPSFTLVGLAETEVKESRDRVRSAIQNAGLEFPNNKKIVVSLAPADLPKDSG
RFDLPIALGILAASEQIQGARLAGHEFAGELSLSGELRPVRGALAMALALHTRGVATKLVLPMDSAQEAALVPGGEVYGA
RHLLDVVQQFIPEDDDRAAAPEPPDDGWARIQVTPAIAAAPYADLAEVKGHAGAKRALEIAAAGGHSLLMVGEPGSGKSM
LAQRFAGLLPAMSIDEALESAAVASLGGRFATERWMCRPTSAPHHTSSAVALVGGGSPPRPGEISRAHHGVLFLDEFPEF
ARSALEALREPLETGTITIARAARRAEFPARFQLIAAMNPCPCGYLGSSLKSCRCTPDQVSRYQGKLSGPLLDRIDLHIE
VPAVSAQQLLDSPPGESTESIRSRVVAARERAMRRQGHANQNLQGSAIDKYAALDATALKFIYNAAAKLGWSARSTHRAL
KVARTIADLAASETVQVVHVAEAVQYRRGLHGAA

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=404764 GNX71_RS01260 WP_206176644.1 275632..277176(-) (comM) [Variovorax sp. RKNM96]
ATGAGTCTGTCTTTGGTGCAAAGCCGAGCTTTGCTAGGGCTGGAAGCGGCCGATGTCACGGTCGAGGTGCATCTGGCGAA
TGGTTTGCCCAGTTTCACGCTGGTCGGGCTGGCGGAGACCGAGGTGAAGGAATCGCGCGATCGCGTGCGCTCGGCCATCC
AGAACGCGGGGCTGGAGTTTCCGAACAATAAAAAGATCGTGGTCAGCCTCGCGCCGGCCGACCTGCCGAAGGATTCCGGC
CGCTTCGACCTGCCGATTGCGCTGGGGATCCTCGCAGCCAGCGAACAGATCCAGGGCGCGCGGCTGGCCGGGCACGAGTT
CGCGGGCGAGTTGTCGTTGTCGGGCGAACTGCGGCCGGTGCGCGGTGCGCTGGCCATGGCGCTGGCCCTGCACACCCGGG
GTGTCGCGACGAAGCTGGTGCTGCCGATGGACAGCGCGCAAGAAGCCGCGCTGGTGCCCGGCGGCGAGGTGTATGGCGCG
AGGCACCTGCTCGATGTGGTGCAGCAATTCATTCCCGAGGACGACGACAGGGCCGCGGCACCCGAGCCGCCCGACGACGG
CTGGGCGCGGATCCAGGTCACACCGGCCATCGCCGCAGCGCCGTATGCCGACCTGGCCGAGGTCAAGGGCCACGCCGGCG
CCAAGCGCGCGCTCGAGATCGCCGCGGCCGGCGGCCACAGCCTGTTGATGGTGGGCGAGCCGGGCTCGGGCAAGTCGATG
CTCGCGCAGCGCTTTGCTGGCCTGCTGCCGGCGATGAGCATCGACGAAGCCCTGGAAAGCGCCGCCGTGGCCAGCCTGGG
CGGGCGTTTCGCGACGGAGCGGTGGATGTGCAGGCCGACGTCCGCGCCGCATCACACCTCCAGCGCGGTGGCGCTGGTGG
GTGGTGGTTCGCCGCCCCGACCGGGCGAGATTTCAAGAGCCCACCACGGCGTGCTCTTCCTCGATGAATTTCCCGAGTTC
GCGCGATCTGCACTGGAGGCGCTGCGCGAACCGCTGGAGACCGGCACGATCACGATCGCCCGTGCCGCACGTCGCGCCGA
GTTTCCCGCGCGCTTTCAGTTGATCGCGGCGATGAACCCCTGTCCTTGCGGCTACCTCGGCTCGTCGCTGAAGTCCTGCC
GCTGCACGCCGGACCAGGTCTCGCGCTACCAGGGCAAGCTCAGCGGGCCGCTGCTGGACCGCATCGACCTGCACATCGAA
GTGCCCGCCGTGTCGGCGCAGCAACTGCTCGATTCACCCCCGGGCGAGTCGACCGAGAGCATCCGCAGCCGCGTGGTGGC
GGCACGCGAACGCGCGATGCGGCGCCAGGGCCACGCCAACCAGAACCTGCAGGGCAGCGCCATCGACAAGTACGCGGCGC
TGGACGCCACTGCCCTCAAGTTCATCTACAACGCCGCCGCCAAGCTCGGCTGGTCGGCGCGCAGCACGCACCGTGCGCTG
AAGGTGGCGCGCACGATTGCCGACCTGGCTGCGTCGGAGACGGTGCAGGTAGTGCATGTGGCGGAGGCGGTGCAGTACCG
AAGGGGGTTGCACGGCGCTGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.196

99.222

0.498
  comM Legionella pneumophila str. Paris

49.611

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.611

100

0.496
  comM Vibrio campbellii strain DS40M4

49.119

99.416

0.488
  comM Glaesserella parasuis strain SC1401

48.733

99.805

0.486
  comM Haemophilus influenzae Rd KW20

48.235

99.222

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.227

99.416

0.44

Multiple sequence alignment