Detailed information NTG0404734

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: IXO597_RS22230
• Genome accession: NZ_CP046495
• Coordinates: 4760009..4761529 (+)
• Length: 506 a.a.
• NCBI ID: WP_075243758.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzae strain IXO597
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	4752483..4771027	4760009..4761529	within	0

Gene organization within MGE regions

Location: 4752483..4771027

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IXO597_RS22180 (IXO597_022320)	-	4752483..4753667 (-)	1185	WP_075243401.1	IS256-like element IS1113 family transposase	-
IXO597_RS22185	-	4753721..4753843 (-)	123	WP_260815732.1	hypothetical protein	-
IXO597_RS22190 (IXO597_022325)	-	4754130..4754366 (+)	237	Protein_4248	hypothetical protein	-
IXO597_RS22200 (IXO597_022335)	-	4754492..4756477 (-)	1986	WP_011407279.1	beta-N-acetylglucosaminidase domain-containing protein	-
IXO597_RS22205 (IXO597_022340)	-	4757031..4757777 (+)	747	Protein_4250	IS701 family transposase	-
IXO597_RS22210 (IXO597_022345)	-	4758312..4758313 (-)	2	WP_109181926.1	IS5 family transposase	-
IXO597_RS22215 (IXO597_022350)	-	4758627..4758914 (+)	288	Protein_4252	IS701 family transposase	-
IXO597_RS22220 (IXO597_022355)	-	4759186..4759560 (-)	375	WP_269468962.1	P-II family nitrogen regulator	-
IXO597_RS22225 (IXO597_022360)	-	4759714..4759992 (+)	279	WP_075243756.1	accessory factor UbiK family protein	-
IXO597_RS22230 (IXO597_022365)	comM	4760009..4761529 (+)	1521	WP_075243758.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
IXO597_RS22235 (IXO597_022370)	-	4761686..4763005 (-)	1320	WP_115862276.1	IS701-like element ISXo15 family transposase	-
IXO597_RS22240 (IXO597_022375)	-	4763094..4764308 (-)	1215	WP_151420414.1	IS4 family transposase	-
IXO597_RS22245 (IXO597_022380)	-	4764538..4765506 (+)	969	WP_260815733.1	IS5-like element ISXo1 family transposase	-
IXO597_RS22250 (IXO597_022385)	-	4765719..4767038 (-)	1320	WP_263115579.1	IS701-like element ISXo15 family transposase	-
IXO597_RS22255 (IXO597_022390)	-	4767109..4767387 (+)	279	Protein_4260	transposase	-
IXO597_RS22260 (IXO597_022395)	-	4767462..4768224 (+)	763	WP_109181916.1	IS5 family transposase	-
IXO597_RS22265 (IXO597_022400)	-	4768260..4769216 (-)	957	WP_151420365.1	IS30-like element IS1112 family transposase	-
IXO597_RS22270 (IXO597_022405)	-	4769305..4769973 (+)	669	Protein_4263	IS630 family transposase	-
IXO597_RS22275 (IXO597_022410)	-	4770062..4771027 (+)	966	WP_151420364.1	IS1595-like element ISXo5 family transposase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 54018.82 Da
• Isoelectric Point: 8.4419

>NTDB_id=404734 IXO597_RS22230 WP_075243758.1 4760009..4761529(+) (comM) [Xanthomonas oryzae pv. oryzae strain IXO597]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALGDYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLHDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide

• Length: 1521 bp

>NTDB_id=404734 IXO597_RS22230 WP_075243758.1 4760009..4761529(+) (comM) [Xanthomonas oryzae pv. oryzae strain IXO597]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGGCGATTACGAATTCCT
CGGCGAACTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCCGCCGAATTGGCGGTGCAGGCGCTCGGGGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCATCCGCGCCCCGGCGAAATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAACCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGTA
TCTCCGGCCCCTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGCAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCTATCG
AACACCTGCAGCTGTCTGCACGCTCGATGCATCGCATACTGCGCGTGGCACGCACCATCGCCGATCTCCACGACAGCGCG
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	56.719	100	0.567
comM	Haemophilus influenzae Rd KW20	55.186	100	0.557
comM	Glaesserella parasuis strain SC1401	54.241	100	0.543
comM	Vibrio campbellii strain DS40M4	54.15	100	0.542
comM	Legionella pneumophila str. Paris	51.911	98.221	0.51
comM	Legionella pneumophila strain ERS1305867	51.911	98.221	0.51
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.063	100	0.462