Detailed information NTG0404674

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: VY92_RS02990
• Genome accession: NZ_CP058307
• Coordinates: 582275..583282 (+)
• Length: 335 a.a.
• NCBI ID: WP_035685781.1
• Uniprot ID: A0ABX4ZSS1
• Organism: Avibacterium paragallinarum strain AVPG2015
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 577275..588282

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VY92_RS02965 (VY92_002970)	aspS	577382..579160 (+)	1779	WP_035685792.1	aspartate--tRNA ligase	-
VY92_RS02970 (VY92_002975)	nudB	579286..579729 (+)	444	WP_035685789.1	dihydroneopterin triphosphate diphosphatase	-
VY92_RS02975 (VY92_002980)	-	580183..580923 (+)	741	WP_035685786.1	YebC/PmpR family DNA-binding transcriptional regulator	-
VY92_RS02980 (VY92_002985)	ruvC	580999..581559 (+)	561	WP_035685784.1	crossover junction endodeoxyribonuclease RuvC	-
VY92_RS02985 (VY92_002990)	ruvA	581647..582261 (+)	615	WP_046097415.1	Holliday junction branch migration protein RuvA	Machinery gene
VY92_RS02990 (VY92_002995)	ruvB	582275..583282 (+)	1008	WP_035685781.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
VY92_RS02995 (VY92_003000)	-	583468..584604 (-)	1137	WP_046097414.1	glycerate kinase	-
VY92_RS03000 (VY92_003005)	-	584617..585993 (-)	1377	WP_035685778.1	GntP family permease	-
VY92_RS03005 (VY92_003010)	-	586117..587211 (-)	1095	WP_035685775.1	sugar diacid recognition domain-containing protein	-
VY92_RS03010 (VY92_003015)	rpsO	587385..587654 (+)	270	WP_017805737.1	30S ribosomal protein S15	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37037.54 Da
• Isoelectric Point: 4.6631

>NTDB_id=404674 VY92_RS02990 WP_035685781.1 582275..583282(+) (ruvB) [Avibacterium paragallinarum strain AVPG2015]
MIEVDRIVSATEKFDEEVIDRAIRPKLLTDYVGQPQVCEQMEIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTKAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAQCLNLAIEQDAAQEIACRSRGTPRIANRLLRRVRDYADVKNAG
QISAQIAKSALSMLDVDPAGFDFMDRKLLSAIIERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRIA
TLRTYRHLGIDKLTD

Nucleotide

• Length: 1008 bp

>NTDB_id=404674 VY92_RS02990 WP_035685781.1 582275..583282(+) (ruvB) [Avibacterium paragallinarum strain AVPG2015]
ATGATTGAAGTAGATAGAATTGTAAGTGCAACAGAAAAATTCGATGAAGAAGTTATTGACCGTGCTATTCGCCCTAAATT
ACTCACCGATTATGTGGGGCAACCGCAAGTTTGCGAACAAATGGAAATCTTTATCCAAGCCGCCAAACTACGTCAAGATG
CACTCGATCACCTATTGATTTTCGGCCCACCGGGGTTAGGGAAAACCACCCTTGCCAATATTGTGGCGAATGAAATGGGA
GTAAATATCCGCACCACTTCAGGGCCAGTGCTTGAAAAAGCAGGCGATTTAGCGGCAATGCTGACCAATCTTGAACCGCA
CGATGTGCTATTTATTGACGAAATTCACCGCCTTTCCCCAGCCATTGAAGAAGTGCTGTATCCCGCAATGGAAGATTATC
AGCTCGATATTATGATTGGTGAAGGTCCAGCGGCACGCTCAATTAAACTGGATTTGCCCCCTTTTACATTAATTGGCGCA
ACCACCAAAGCTGGCTCGCTCACTTCCCCTTTGCGTGATCGCTTTGGCATTGTGCAACGCTTAGAATTTTATTCCGTAGA
AGATCTCACGTCCATTGTGGCACGCAGTGCGCAATGTTTAAACTTAGCCATTGAACAAGATGCGGCGCAAGAAATTGCCT
GTCGTTCTCGTGGTACACCGCGTATTGCCAACCGTTTATTACGCCGTGTGAGAGATTACGCCGATGTTAAAAATGCAGGG
CAAATTTCCGCACAAATTGCCAAATCCGCCCTTTCAATGTTAGATGTTGATCCCGCAGGTTTCGACTTTATGGATCGCAA
ATTATTAAGCGCCATTATTGAACGTTTTGACGGTGGCCCTGTGGGCTTAGACAACCTTGCCGCCGCCATTGGTGAAGAAC
GTGAAACCATTGAAGATGTGCTTGAGCCTTATTTAATCCAACAAGGCTTTTTACAACGCACCCCAAGAGGACGTATCGCC
ACATTGCGAACCTATCGTCATTTGGGAATTGATAAGCTGACTGATTAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.162	97.612	0.597
ruvB	Streptococcus pneumoniae TIGR4	58.232	97.91	0.57
ruvB	Streptococcus pneumoniae R6	59.621	94.627	0.564
ruvB	Streptococcus pneumoniae D39	59.621	94.627	0.564
ruvB	Helicobacter pylori 26695	54.985	98.806	0.543
ruvB	Synechocystis sp. PCC 6803	55.987	92.239	0.516