Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   VY92_RS02985 Genome accession   NZ_CP058307
Coordinates   581647..582261 (+) Length   204 a.a.
NCBI ID   WP_046097415.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 576647..587261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS02955 (VY92_002960) - 576706..576996 (+) 291 WP_035686016.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  VY92_RS02960 (VY92_002965) - 576997..577293 (+) 297 WP_017805749.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family -
  VY92_RS02965 (VY92_002970) aspS 577382..579160 (+) 1779 WP_035685792.1 aspartate--tRNA ligase -
  VY92_RS02970 (VY92_002975) nudB 579286..579729 (+) 444 WP_035685789.1 dihydroneopterin triphosphate diphosphatase -
  VY92_RS02975 (VY92_002980) - 580183..580923 (+) 741 WP_035685786.1 YebC/PmpR family DNA-binding transcriptional regulator -
  VY92_RS02980 (VY92_002985) ruvC 580999..581559 (+) 561 WP_035685784.1 crossover junction endodeoxyribonuclease RuvC -
  VY92_RS02985 (VY92_002990) ruvA 581647..582261 (+) 615 WP_046097415.1 Holliday junction branch migration protein RuvA Machinery gene
  VY92_RS02990 (VY92_002995) ruvB 582275..583282 (+) 1008 WP_035685781.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  VY92_RS02995 (VY92_003000) - 583468..584604 (-) 1137 WP_046097414.1 glycerate kinase -
  VY92_RS03000 (VY92_003005) - 584617..585993 (-) 1377 WP_035685778.1 GntP family permease -
  VY92_RS03005 (VY92_003010) - 586117..587211 (-) 1095 WP_035685775.1 sugar diacid recognition domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22559.24 Da        Isoelectric Point: 6.5013

>NTDB_id=404673 VY92_RS02985 WP_046097415.1 581647..582261(+) (ruvA) [Avibacterium paragallinarum strain AVPG2015]
MIGRLTGLLVEKQPPEILLDVQGVGYELLLPMTSFYNLPETGQQTTLFTHLVVREDAHLLFGFSHKQDRTLFRELIKTNG
VGPKLALAILSAMSVNEFAYAIEREELSKLVKIPGVGKKTAERLLVELKGKFKDLPQGDFFIESTHLPVAEKSSSKENVQ
IDDAIAALVALGYKASEAEKMVKKVANPDLNSEQLIREALKASL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=404673 VY92_RS02985 WP_046097415.1 581647..582261(+) (ruvA) [Avibacterium paragallinarum strain AVPG2015]
ATGATAGGCCGTTTAACAGGATTATTAGTCGAAAAGCAACCACCAGAAATTTTGCTTGATGTACAAGGTGTGGGCTATGA
GCTTTTATTGCCAATGACAAGCTTTTATAACTTGCCAGAAACAGGGCAACAAACAACCTTATTTACCCATTTAGTCGTGC
GAGAAGATGCACATTTGCTGTTTGGATTTTCCCACAAGCAAGACCGCACTTTATTTCGTGAATTAATTAAAACTAATGGC
GTTGGACCAAAACTAGCGTTGGCAATTTTATCCGCAATGTCAGTTAATGAATTTGCTTATGCGATTGAGCGAGAGGAATT
ATCTAAATTAGTTAAAATTCCAGGGGTAGGAAAAAAAACAGCAGAACGTTTATTAGTTGAATTAAAAGGAAAATTTAAGG
ATTTACCACAAGGTGATTTCTTTATTGAAAGCACCCATTTACCAGTGGCAGAAAAATCATCAAGTAAAGAAAATGTTCAA
ATTGATGATGCAATTGCCGCATTAGTTGCACTAGGTTATAAAGCGAGTGAAGCTGAAAAAATGGTGAAGAAAGTCGCAAA
CCCAGATCTCAATAGTGAGCAGTTAATTCGTGAAGCACTAAAGGCATCGTTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.321

100

0.377
  ruvA Streptococcus pneumoniae R6

36.453

99.51

0.363
  ruvA Streptococcus pneumoniae D39

36.453

99.51

0.363

Multiple sequence alignment