Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B565_RS19515 Genome accession   NC_015424
Coordinates   4320127..4321641 (+) Length   504 a.a.
NCBI ID   WP_013724195.1    Uniprot ID   -
Organism   Aeromonas veronii B565     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4315127..4326641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B565_RS19500 (B565_3839) - 4316864..4317808 (-) 945 WP_005356161.1 branched-chain amino acid transaminase -
  B565_RS19505 (B565_3840) ilvM 4317821..4318099 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  B565_RS19510 (B565_3841) ilvG 4318096..4319742 (-) 1647 WP_005356156.1 acetolactate synthase 2 catalytic subunit -
  B565_RS19515 (B565_3842) comM 4320127..4321641 (+) 1515 WP_013724195.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B565_RS19520 (B565_3843) - 4321768..4322667 (+) 900 WP_005339610.1 acyltransferase -
  B565_RS19525 (B565_3844) - 4322674..4323639 (+) 966 WP_013724196.1 acyltransferase -
  B565_RS19530 - 4323564..4324070 (-) 507 WP_005356145.1 DUF523 domain-containing protein -
  B565_RS19535 (B565_3845) - 4324067..4324717 (-) 651 WP_005339607.1 NUDIX hydrolase -
  B565_RS19540 (B565_3846) - 4324792..4325427 (+) 636 WP_005356142.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54563.52 Da        Isoelectric Point: 7.6884

>NTDB_id=40466 B565_RS19515 WP_013724195.1 4320127..4321641(+) (comM) [Aeromonas veronii B565]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPAPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLVARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=40466 B565_RS19515 WP_013724195.1 4320127..4321641(+) (comM) [Aeromonas veronii B565]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACGGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAATATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGAGATCGGGTCCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCTCCCGCCGATCTACCCAAGGAGGGGGGCCGT
TTTGATCTGGCCATCGCCATCGGTATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATATCTGCTCGATCACGAATTTTT
GGGGGAATTGGCCCTGACCGGAGAGATCCGCCCTGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACAGCTTGGCTGGCAGGCCAGTACGAACTGCCACTGCCGGCTCCCCAAAGCGCGGAGAGCCTGCCAGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCACCCGGCACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATTCTGCCGCCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACACCGCGCGCTGGTCACTGGCACCACAGGCCATACCG
CACGCCGCACCACAGTGCCTCGGCAGTGGCGCTGGTGGGAGGCGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGTCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGATCTGACTGTGGAAGTGCCACTGCTACCCAAGGGGAGCTTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAGCAGATCCGCGATCGGGTACTGGTGGCGAGAGAGCGCATGCTGAGTCGCAACGGCAAGCTCAACAACCT
GCTAGATAGCCGTGAGATAGAGGATATTTGCCGCCTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACCGGCTGCTGTCGCGACTGCGCAGCAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464

Multiple sequence alignment