Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GNG26_RS21465 Genome accession   NZ_CP046446
Coordinates   4515562..4517082 (+) Length   506 a.a.
NCBI ID   WP_156240025.1    Uniprot ID   -
Organism   Leclercia sp. J807     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4510562..4522082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNG26_RS21445 (GNG26_21445) ilvE 4512121..4513050 (-) 930 WP_103825309.1 branched-chain-amino-acid transaminase -
  GNG26_RS21450 (GNG26_21450) ilvM 4513068..4513337 (-) 270 WP_103177473.1 acetolactate synthase 2 small subunit -
  GNG26_RS21455 (GNG26_21455) ilvG 4513334..4514980 (-) 1647 WP_156240024.1 acetolactate synthase 2 catalytic subunit -
  GNG26_RS21460 (GNG26_21460) ilvL 4515120..4515218 (-) 99 WP_001311244.1 ilv operon leader peptide -
  GNG26_RS21465 (GNG26_21465) comM 4515562..4517082 (+) 1521 WP_156240025.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GNG26_RS21470 (GNG26_21470) - 4517108..4517446 (-) 339 WP_039031246.1 DUF413 domain-containing protein -
  GNG26_RS21475 (GNG26_21475) hdfR 4517565..4518386 (+) 822 WP_156240026.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55172.44 Da        Isoelectric Point: 7.0278

>NTDB_id=404355 GNG26_RS21465 WP_156240025.1 4515562..4517082(+) (comM) [Leclercia sp. J807]
MSLSVVYTRAALGVEAPLICVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLVASEQLSSTRISAYEFVGELALTGALRGVPGAISGALAAIRAGREIIVARDNAAEVSLIEEKGCLVAEHL
QEVCAFLEGRHELAAPVGEPFVAEYNECDISDIIGQEQGKRALEITAAGAHNLLLIGPPGTGKTMLASRLNTLLPPLSNH
EALESAAIVSLVSATSMYKQWRQRPFRAPHHSASLVAMVGGGAIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GQINISRTRAKISYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGLLSQAHKTG
ESSLTVRNRVIVAQERQLARQNKRNAHLDNAEIRTFCRLAADDALWLEETLTHFGLSVRAWQRLLKVARTIADLEECENI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=404355 GNG26_RS21465 WP_156240025.1 4515562..4517082(+) (comM) [Leclercia sp. J807]
ATGTCATTGTCGGTTGTCTATACCCGCGCTGCATTAGGCGTTGAAGCACCGCTTATTTGCGTCGAAGTTCATCTCAGTAA
TGGCCTGCCTGGCCTGACGCTGGTCGGCCTGCCCGAAACCACCGTCAAGGAGGCCAGAGACCGGGTACGCAGCGCGATCA
TCAATAGTGGTTATACCTTCCCGGCCAAAAAAATCACCATCAATCTGGCCCCAGCCGATCTCCCTAAGGAAGGCGGACGA
TACGATTTACCTATCGCCATCGCGCTTCTCGTCGCCTCTGAGCAGCTCTCCTCCACCAGGATAAGCGCATATGAGTTTGT
GGGTGAGCTGGCGCTTACAGGCGCATTAAGAGGGGTTCCTGGCGCGATATCTGGCGCTCTGGCGGCTATACGCGCCGGGA
GAGAGATTATCGTCGCCAGAGATAATGCTGCAGAAGTCAGCCTTATTGAAGAAAAAGGCTGCCTGGTTGCTGAACATCTG
CAGGAGGTATGCGCTTTTCTTGAGGGGCGTCATGAGCTGGCCGCGCCCGTTGGGGAGCCGTTTGTTGCCGAATATAACGA
GTGTGACATCAGCGATATCATCGGCCAGGAACAGGGTAAGAGGGCGCTGGAGATCACCGCAGCCGGTGCGCATAACCTGT
TGCTCATTGGCCCACCCGGCACCGGCAAAACCATGCTCGCGAGCCGGCTCAACACTCTGCTGCCGCCACTCAGTAACCAT
GAGGCGCTGGAAAGCGCGGCTATCGTAAGCCTGGTCAGCGCCACATCAATGTATAAACAATGGCGTCAGCGCCCTTTCCG
GGCCCCGCATCATAGTGCCTCGCTGGTAGCCATGGTGGGTGGAGGCGCAATCCCTGCGCCAGGAGAGATCTCACTGGCAC
ATAACGGCATCCTGTTCCTGGACGAATTGCCCGAGTTTGAGCGTCGCGTACTGGATGCCTTACGCGAGCCCATCGAATCC
GGACAAATTAATATCTCCCGCACCCGCGCCAAGATCAGTTATCCGGCACGCTTCCAGCTTATCGCCGCCATGAACCCCAG
CCCAACGGGGCACTATCAAGGCAATCATAATCGCTGCTCGCCCGAGCAGACGCTGCGCTATCTGGGTCGCTTGTCCGGGC
CATTCCTCGACCGCTTCGATCTATCGCTCGAGATCCCACTCCCGCCGCCAGGCTTGCTAAGCCAGGCGCATAAAACGGGA
GAATCAAGCCTCACCGTGCGAAACCGAGTGATTGTCGCGCAGGAGAGGCAGCTGGCGAGGCAGAATAAACGTAACGCGCA
TCTCGACAACGCAGAGATCCGCACCTTTTGCCGGCTAGCGGCAGACGACGCGCTGTGGCTGGAGGAGACACTTACCCACT
TTGGTCTGTCAGTACGTGCGTGGCAGCGGTTGTTAAAAGTTGCCCGTACTATTGCCGATCTGGAGGAGTGTGAAAATATT
GAACGCAGGCATCTACAGGAAGCGCTGAGCTATCGCGCTATTGACCGCCTGCTGTTACACCTGCAAAAGATGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.491

100

0.601
  comM Glaesserella parasuis strain SC1401

59.528

100

0.599
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.071

100

0.441

Multiple sequence alignment