Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GNG26_RS01285 Genome accession   NZ_CP046446
Coordinates   276638..277162 (+) Length   174 a.a.
NCBI ID   WP_114316148.1    Uniprot ID   -
Organism   Leclercia sp. J807     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 271638..282162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNG26_RS01270 (GNG26_01270) - 272788..273204 (+) 417 WP_156237519.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GNG26_RS01275 (GNG26_01275) - 273207..273560 (+) 354 WP_103825401.1 MmcQ/YjbR family DNA-binding protein -
  GNG26_RS01280 (GNG26_01280) uvrA 273561..276386 (-) 2826 WP_156237520.1 excinuclease ABC subunit UvrA -
  GNG26_RS01285 (GNG26_01285) ssb 276638..277162 (+) 525 WP_114316148.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GNG26_RS01290 (GNG26_01290) - 277248..277529 (-) 282 WP_103825404.1 YjcB family protein -
  GNG26_RS01295 (GNG26_01295) - 278077..279480 (+) 1404 WP_156237521.1 sensor domain-containing diguanylate cyclase -
  GNG26_RS01300 (GNG26_01300) - 279820..281406 (+) 1587 WP_114316146.1 EAL domain-containing protein -
  GNG26_RS01305 (GNG26_01305) soxS 281403..281729 (-) 327 WP_103177869.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=404338 GNG26_RS01285 WP_114316148.1 276638..277162(+) (ssb) [Leclercia sp. J807]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQPSAPAQ
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=404338 GNG26_RS01285 WP_114316148.1 276638..277162(+) (ssb) [Leclercia sp. J807]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACCTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTCGTGCTGTTTGGCAAACTGGCTGAGGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGCGGTCGTCAGGGCGGCGGCGCGCCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCCGTCTGCGCCAGCGCAG
TCCAACGAACCGCCAATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.799
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374

Multiple sequence alignment