Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ALIDE2_RS01060 Genome accession   NC_015422
Coordinates   245625..247160 (-) Length   511 a.a.
NCBI ID   WP_013721202.1    Uniprot ID   F4GED2
Organism   Alicycliphilus denitrificans K601     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 240625..252160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALIDE2_RS01045 (Alide2_0211) - 241028..243928 (+) 2901 WP_013721201.1 C1 family peptidase -
  ALIDE2_RS25685 (Alide2_0212) - 243961..245118 (-) 1158 WP_337999173.1 TonB-dependent receptor plug domain-containing protein -
  ALIDE2_RS25605 - 245446..245568 (-) 123 WP_274427541.1 hypothetical protein -
  ALIDE2_RS01060 (Alide2_0214) comM 245625..247160 (-) 1536 WP_013721202.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ALIDE2_RS01065 (Alide2_0215) - 247299..248030 (+) 732 WP_013517183.1 TorF family putative porin -
  ALIDE2_RS01070 (Alide2_0216) glnK 248050..248388 (+) 339 WP_013517184.1 P-II family nitrogen regulator -
  ALIDE2_RS01075 (Alide2_0217) - 248411..249799 (+) 1389 WP_013517185.1 ammonium transporter -
  ALIDE2_RS24900 - 249984..250319 (-) 336 WP_148262953.1 hypothetical protein -
  ALIDE2_RS01085 (Alide2_0219) - 250530..251765 (+) 1236 Protein_217 IS3 family transposase -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 53587.41 Da        Isoelectric Point: 8.1045

>NTDB_id=40421 ALIDE2_RS01060 WP_013721202.1 245625..247160(-) (comM) [Alicycliphilus denitrificans K601]
MSLALVQSRALLGLQASAVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPTNKKITVNLAPADLPKDSG
RYDLPIALGILAASGQIAAERLAGWEFAGELSLSGLLRPVRGALATSLALRAEQPPVRMVLPPGSAEEAALVPGAEIYRA
RHLLDVVRQFLPAAAPPQEDNDGWQRLAPAAPAVHTSSPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSMLAQR
FASLLPPMSVEQALESAAIASLAGRFTGAQWMQRVTASPHHSCSAVALVGGGSPPRPGEISLAHEGVLFLDEFPEFARSA
LEALREPLETGLITISRAAQRAEFPARFQLVAAMNPCPCGFAGSAQRACRCTPDQVARYQGKLSGPLLDRIDLHVEVPHL
PAEDLLNAPAGEASSAVRERVARAHALALARQGTPNQALQGQQLDRMAALDEAAARFLQTAAARMGWSARGTHRALKVAR
TIADLAASEQVGVAHVAEAVQYRRVLRGTQA

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=40421 ALIDE2_RS01060 WP_013721202.1 245625..247160(-) (comM) [Alicycliphilus denitrificans K601]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCAGGCAAGCGCCGTCACCGTGGAGGTGCATCTGGCCAA
CGGCCTGCCGAGCTTCGCGCTCGTGGGCCTGGCCGACGTGGAGGTGAAGGAGGCGCGCGAGCGCGTGCGCTCGGCCCTGC
AGAACGCGGGGCTGGAGTTCCCCACCAACAAGAAGATCACCGTGAACCTGGCGCCGGCCGACCTGCCCAAGGACTCGGGG
CGCTACGACCTGCCCATCGCCCTGGGTATCCTGGCCGCCAGCGGGCAGATCGCCGCTGAACGCCTGGCGGGCTGGGAGTT
CGCGGGCGAGCTGTCGCTGTCGGGCCTGCTGCGGCCCGTGCGCGGCGCGCTGGCCACCAGCCTGGCGCTGCGCGCCGAGC
AGCCGCCCGTGCGCATGGTGCTGCCGCCGGGCAGCGCCGAGGAGGCCGCCCTGGTGCCCGGCGCCGAGATCTACCGCGCG
CGCCACCTGCTGGACGTGGTGCGCCAGTTCCTGCCCGCAGCCGCGCCGCCGCAGGAAGACAACGACGGCTGGCAGCGCCT
GGCGCCGGCCGCGCCCGCCGTCCACACCAGCAGCCCCGACCTTGCTGACGTGAAGGGCCAGGCCGCCGCCAAGCGCGCAC
TGGAAATCGCCGCAGCCGGCGGCCATGGGCTGCTGCTCGTGGGCCCTCCGGGCTCGGGCAAATCCATGCTGGCGCAGCGC
TTCGCCAGCCTGCTGCCGCCGATGAGCGTGGAGCAGGCGCTGGAGAGCGCGGCCATCGCCAGCCTGGCCGGGCGCTTCAC
GGGCGCGCAGTGGATGCAGCGCGTCACGGCCAGCCCGCACCACAGCTGCAGCGCCGTCGCACTGGTGGGCGGGGGATCGC
CGCCGCGGCCCGGCGAGATCTCGCTGGCGCACGAGGGAGTCCTGTTCCTCGACGAGTTCCCCGAATTCGCACGCAGCGCC
CTGGAGGCCCTGCGCGAGCCGCTGGAGACCGGCCTCATCACCATCTCGCGCGCGGCGCAGCGCGCCGAGTTCCCGGCGCG
CTTTCAGCTCGTCGCCGCCATGAACCCCTGCCCCTGCGGCTTCGCGGGCTCCGCCCAGCGCGCCTGCCGCTGCACGCCGG
ACCAGGTGGCGCGCTACCAGGGCAAGCTGAGCGGCCCGTTGCTCGACCGCATAGACCTGCACGTGGAGGTGCCGCACCTG
CCCGCCGAGGACCTGCTGAACGCCCCCGCCGGCGAGGCGAGCAGCGCCGTGCGCGAGCGCGTGGCCCGCGCCCACGCGCT
GGCCCTGGCGCGCCAGGGCACGCCCAACCAAGCACTGCAAGGCCAGCAGCTCGACCGCATGGCCGCGCTGGACGAGGCCG
CAGCGCGCTTCCTGCAGACCGCCGCCGCGCGCATGGGCTGGTCGGCGCGCGGCACGCACCGCGCGCTGAAGGTGGCACGC
ACCATCGCCGACCTGGCGGCGTCGGAGCAGGTGGGCGTGGCCCATGTGGCCGAGGCGGTACAGTACAGGCGGGTGCTGCG
CGGCACGCAGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-404)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(411-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4GED2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.556

100

0.519
  comM Haemophilus influenzae Rd KW20

49.904

100

0.509
  comM Glaesserella parasuis strain SC1401

49.518

100

0.503
  comM Vibrio campbellii strain DS40M4

49.902

99.609

0.497
  comM Legionella pneumophila str. Paris

48.054

100

0.483
  comM Legionella pneumophila strain ERS1305867

48.054

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

100

0.434

Multiple sequence alignment