Detailed information
Bioinformatically predicted
Overview
| Name | pilM | Type | Machinery gene |
| Locus tag | GNT55_RS29370 | Genome accession | NZ_CP046404 |
| Coordinates | 6236705..6237769 (-) | Length | 354 a.a. |
| NCBI ID | WP_003110888.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain SE5416 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 6193063..6240425 | 6236705..6237769 | within | 0 |
Gene organization within MGE regions
Location: 6193063..6240425
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNT55_RS29070 (GNT55_29070) | pilQ | 6193063..6195207 (-) | 2145 | WP_003161249.1 | type 4a pilus secretin PilQ | Machinery gene |
| GNT55_RS29075 (GNT55_29075) | - | 6195261..6195368 (-) | 108 | Protein_5775 | pilus assembly protein PilP | - |
| GNT55_RS29080 (GNT55_29080) | - | 6195492..6195851 (-) | 360 | WP_003094179.1 | Mor transcription activator family protein | - |
| GNT55_RS29085 (GNT55_29085) | - | 6195854..6196417 (-) | 564 | WP_023657063.1 | gp16 family protein | - |
| GNT55_RS29090 (GNT55_29090) | - | 6196404..6196871 (-) | 468 | WP_179063022.1 | hypothetical protein | - |
| GNT55_RS29095 (GNT55_29095) | - | 6196873..6197091 (-) | 219 | WP_003148480.1 | hypothetical protein | - |
| GNT55_RS29100 (GNT55_29100) | - | 6197093..6197782 (-) | 690 | WP_003094188.1 | DUF2786 domain-containing protein | - |
| GNT55_RS29105 (GNT55_29105) | - | 6197784..6198407 (-) | 624 | WP_003094190.1 | DUF3164 family protein | - |
| GNT55_RS29110 (GNT55_29110) | - | 6198400..6198600 (-) | 201 | WP_003148482.1 | hypothetical protein | - |
| GNT55_RS32670 | - | 6198593..6199204 (-) | 612 | WP_003148484.1 | hypothetical protein | - |
| GNT55_RS29120 (GNT55_29120) | - | 6199204..6199509 (-) | 306 | WP_003148486.1 | hypothetical protein | - |
| GNT55_RS29125 (GNT55_29125) | - | 6199506..6199847 (-) | 342 | WP_094226439.1 | hypothetical protein | - |
| GNT55_RS29130 (GNT55_29130) | - | 6199849..6201018 (-) | 1170 | WP_023102419.1 | ExeA family protein | - |
| GNT55_RS29135 (GNT55_29135) | - | 6201018..6202796 (-) | 1779 | WP_094226440.1 | DDE-type integrase/transposase/recombinase | - |
| GNT55_RS29140 (GNT55_29140) | - | 6202801..6203757 (-) | 957 | WP_023657068.1 | hypothetical protein | - |
| GNT55_RS29145 (GNT55_29145) | - | 6203815..6204114 (-) | 300 | WP_031642102.1 | helix-turn-helix domain-containing protein | - |
| GNT55_RS29150 (GNT55_29150) | - | 6204111..6204371 (-) | 261 | WP_058177651.1 | hypothetical protein | - |
| GNT55_RS29155 (GNT55_29155) | - | 6204364..6204852 (-) | 489 | WP_094226441.1 | hypothetical protein | - |
| GNT55_RS29160 (GNT55_29160) | - | 6204972..6205682 (-) | 711 | WP_179063320.1 | hypothetical protein | - |
| GNT55_RS29165 (GNT55_29165) | - | 6205709..6206029 (+) | 321 | WP_033866801.1 | hypothetical protein | - |
| GNT55_RS29170 (GNT55_29170) | - | 6206075..6206284 (-) | 210 | WP_023657070.1 | DNA-binding protein | - |
| GNT55_RS32890 | - | 6206383..6206820 (+) | 438 | WP_179063041.1 | helix-turn-helix domain-containing protein | - |
| GNT55_RS29180 (GNT55_29180) | - | 6206840..6207043 (+) | 204 | WP_094226442.1 | hypothetical protein | - |
| GNT55_RS29185 | - | 6207099..6207998 (-) | 900 | WP_179063321.1 | hypothetical protein | - |
| GNT55_RS29190 (GNT55_29190) | - | 6208172..6208468 (+) | 297 | WP_003152187.1 | putative holin | - |
| GNT55_RS29195 | - | 6208471..6208629 (+) | 159 | WP_162835812.1 | hypothetical protein | - |
| GNT55_RS29200 (GNT55_29195) | - | 6208626..6209255 (+) | 630 | WP_033866804.1 | transglycosylase SLT domain-containing protein | - |
| GNT55_RS29205 (GNT55_29200) | - | 6209436..6210047 (+) | 612 | WP_023657073.1 | hypothetical protein | - |
| GNT55_RS29210 (GNT55_29205) | - | 6210051..6210440 (+) | 390 | WP_003094234.1 | hypothetical protein | - |
| GNT55_RS29215 (GNT55_29210) | - | 6210430..6210738 (+) | 309 | WP_003094236.1 | hypothetical protein | - |
| GNT55_RS29220 (GNT55_29215) | - | 6210744..6211319 (+) | 576 | WP_003094238.1 | DUF3486 family protein | - |
| GNT55_RS29225 (GNT55_29220) | - | 6211321..6213024 (+) | 1704 | WP_023657074.1 | phage protein gp28 | - |
| GNT55_RS29230 (GNT55_29225) | - | 6213024..6214502 (+) | 1479 | WP_003152194.1 | DUF935 domain-containing protein | - |
| GNT55_RS29235 (GNT55_29230) | - | 6214622..6215752 (+) | 1131 | WP_223656224.1 | phage minor head protein | - |
| GNT55_RS29240 (GNT55_29235) | - | 6215749..6216321 (+) | 573 | WP_031630686.1 | phage virion morphogenesis protein | - |
| GNT55_RS29245 (GNT55_29240) | - | 6216540..6217790 (+) | 1251 | WP_223697285.1 | peptidase | - |
| GNT55_RS29250 (GNT55_29245) | - | 6217794..6218171 (+) | 378 | WP_023102437.1 | capsid cement protein | - |
| GNT55_RS29255 (GNT55_29250) | - | 6218183..6219112 (+) | 930 | WP_179063322.1 | phage capsid protein | - |
| GNT55_RS29260 (GNT55_29255) | - | 6219159..6219353 (+) | 195 | WP_003094256.1 | hypothetical protein | - |
| GNT55_RS29265 (GNT55_29260) | - | 6219353..6219679 (+) | 327 | WP_003094258.1 | hypothetical protein | - |
| GNT55_RS29270 (GNT55_29265) | - | 6219681..6220196 (+) | 516 | WP_223198311.1 | DUF1320 domain-containing protein | - |
| GNT55_RS29275 (GNT55_29270) | - | 6220198..6220653 (+) | 456 | WP_003094263.1 | hypothetical protein | - |
| GNT55_RS29280 (GNT55_29275) | - | 6220650..6220859 (+) | 210 | WP_003139972.1 | hypothetical protein | - |
| GNT55_RS29285 (GNT55_29280) | - | 6220863..6221615 (+) | 753 | WP_003094267.1 | hypothetical protein | - |
| GNT55_RS29290 (GNT55_29285) | - | 6221617..6222123 (+) | 507 | WP_179063323.1 | DUF6631 family protein | - |
| GNT55_RS29295 | - | 6222120..6222263 (+) | 144 | WP_003094272.1 | hypothetical protein | - |
| GNT55_RS29300 (GNT55_29290) | - | 6222350..6226192 (+) | 3843 | WP_023657077.1 | phage tail length tape measure family protein | - |
| GNT55_RS29305 (GNT55_29295) | - | 6226200..6227156 (+) | 957 | WP_058199458.1 | hypothetical protein | - |
| GNT55_RS29310 (GNT55_29300) | - | 6227158..6228081 (+) | 924 | WP_012613801.1 | hypothetical protein | - |
| GNT55_RS29315 (GNT55_29305) | - | 6228081..6229784 (+) | 1704 | WP_003117242.1 | hypothetical protein | - |
| GNT55_RS29320 (GNT55_29310) | - | 6229774..6230595 (+) | 822 | WP_179063324.1 | phage BR0599 family protein | - |
| GNT55_RS29325 (GNT55_29315) | - | 6230604..6230843 (+) | 240 | WP_003094581.1 | hypothetical protein | - |
| GNT55_RS29330 (GNT55_29320) | - | 6230840..6231058 (+) | 219 | WP_003117240.1 | hypothetical protein | - |
| GNT55_RS29335 (GNT55_29325) | - | 6231048..6233255 (+) | 2208 | WP_075116631.1 | phage tail protein | - |
| GNT55_RS29340 (GNT55_29330) | - | 6233252..6234400 (+) | 1149 | WP_179063325.1 | hypothetical protein | - |
| GNT55_RS29345 (GNT55_29335) | - | 6234397..6234684 (+) | 288 | WP_010791802.1 | hypothetical protein | - |
| GNT55_RS29350 (GNT55_29340) | - | 6234758..6234982 (+) | 225 | WP_003121473.1 | hypothetical protein | - |
| GNT55_RS29355 (GNT55_29345) | pilP | 6235070..6235492 (-) | 423 | Protein_5831 | type 4a pilus biogenesis lipoprotein PilP | - |
| GNT55_RS29360 (GNT55_29350) | pilO | 6235489..6236112 (-) | 624 | WP_003103268.1 | type 4a pilus biogenesis protein PilO | - |
| GNT55_RS29365 (GNT55_29355) | pilN | 6236109..6236705 (-) | 597 | WP_003095839.1 | type 4a pilus biogenesis protein PilN | - |
| GNT55_RS29370 (GNT55_29360) | pilM | 6236705..6237769 (-) | 1065 | WP_003110888.1 | type IV pilus assembly protein PilM | Machinery gene |
| GNT55_RS29375 (GNT55_29365) | - | 6237954..6240425 (+) | 2472 | WP_003095841.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 37983.48 Da Isoelectric Point: 4.5405
>NTDB_id=404047 GNT55_RS29370 WP_003110888.1 6236705..6237769(-) (pilM) [Pseudomonas aeruginosa strain SE5416]
MLGLIKKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVV
AVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERSYALLSSQLGADTDQLTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANP
FADMALNGKVNAGALASDAPALMIACGLALRSFD
MLGLIKKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVV
AVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERSYALLSSQLGADTDQLTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANP
FADMALNGKVNAGALASDAPALMIACGLALRSFD
Nucleotide
Download Length: 1065 bp
>NTDB_id=404047 GNT55_RS29370 WP_003110888.1 6236705..6237769(-) (pilM) [Pseudomonas aeruginosa strain SE5416]
GTGCTAGGGCTCATAAAGAAGAAAGCGAACACCTTGCTGGGGATCGACATCAGCTCGACCTCGGTAAAGCTCCTTGAGTT
GAGCCGCTCCGGAGGCCGCTACAAAGTGGAGGCCTATGCCGTCGAGCCGCTTCCGCCGAATGCAGTCGTGGAAAAGAACA
TCGTCGAGCTGGAAGGGGTCGGCCAGGCGTTGTCACGGGTGCTGGTCAAGGCGAAAACCAACCTGAAGTCGGCCGTGGTC
GCCGTCGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGAGGCCGGGCTTTCCGAGGATGAACTGGAAAACCAGCT
GAAGATCGAGGCCGACCAGTACATCCCCTATCCGCTGGAGGAAGTCGCCATCGACTTCGAGGTCCAGGGGCTCTCCGCGC
GCAATCCCGAGCGCGTGGACGTACTCCTGGCCGCCTGTCGGAAAGAAAACGTCGAGGTTCGCGAAGCGGCCCTGGCGCTG
GCCGGCCTGACCGCCAAGGTGGTCGACGTCGAGGCCTACGCGCTGGAGCGCTCCTATGCGCTGCTGAGCAGCCAGCTGGG
TGCCGACACCGACCAGTTGACCGTGGCGGTAGTGGACATCGGCGCGACCATGACCACCCTGAGCGTCCTGCACAACGGAC
GCACCATCTATACCCGCGAACAGCTGTTCGGCGGTCGCCAGCTCACCGAGGAGATCCAGCGGCGTTACGGACTCTCGGTG
GAGGAAGCCGGTCTCGCCAAGAAGCAGGGTGGTCTTCCGGATGACTACGACAGCGAAGTTCTGCGTCCGTTCAAGGACGC
CGTGGTGCAGCAGGTTTCCCGCTCGCTGCAGTTCTTCTTCGCCGCCGGACAGTTCAACGACGTCGACTACATCGTCCTGG
CGGGCGGTACGGCGTCTATCCAGGATCTCGATCGGTTGATCCAGCAGAAGATCGGCACCCCGACCCTGGTCGCCAACCCG
TTCGCCGACATGGCGCTGAACGGCAAGGTGAATGCCGGCGCCCTGGCCAGCGACGCTCCGGCGTTGATGATCGCCTGCGG
CCTGGCGTTGAGGAGTTTCGACTGA
GTGCTAGGGCTCATAAAGAAGAAAGCGAACACCTTGCTGGGGATCGACATCAGCTCGACCTCGGTAAAGCTCCTTGAGTT
GAGCCGCTCCGGAGGCCGCTACAAAGTGGAGGCCTATGCCGTCGAGCCGCTTCCGCCGAATGCAGTCGTGGAAAAGAACA
TCGTCGAGCTGGAAGGGGTCGGCCAGGCGTTGTCACGGGTGCTGGTCAAGGCGAAAACCAACCTGAAGTCGGCCGTGGTC
GCCGTCGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGAGGCCGGGCTTTCCGAGGATGAACTGGAAAACCAGCT
GAAGATCGAGGCCGACCAGTACATCCCCTATCCGCTGGAGGAAGTCGCCATCGACTTCGAGGTCCAGGGGCTCTCCGCGC
GCAATCCCGAGCGCGTGGACGTACTCCTGGCCGCCTGTCGGAAAGAAAACGTCGAGGTTCGCGAAGCGGCCCTGGCGCTG
GCCGGCCTGACCGCCAAGGTGGTCGACGTCGAGGCCTACGCGCTGGAGCGCTCCTATGCGCTGCTGAGCAGCCAGCTGGG
TGCCGACACCGACCAGTTGACCGTGGCGGTAGTGGACATCGGCGCGACCATGACCACCCTGAGCGTCCTGCACAACGGAC
GCACCATCTATACCCGCGAACAGCTGTTCGGCGGTCGCCAGCTCACCGAGGAGATCCAGCGGCGTTACGGACTCTCGGTG
GAGGAAGCCGGTCTCGCCAAGAAGCAGGGTGGTCTTCCGGATGACTACGACAGCGAAGTTCTGCGTCCGTTCAAGGACGC
CGTGGTGCAGCAGGTTTCCCGCTCGCTGCAGTTCTTCTTCGCCGCCGGACAGTTCAACGACGTCGACTACATCGTCCTGG
CGGGCGGTACGGCGTCTATCCAGGATCTCGATCGGTTGATCCAGCAGAAGATCGGCACCCCGACCCTGGTCGCCAACCCG
TTCGCCGACATGGCGCTGAACGGCAAGGTGAATGCCGGCGCCCTGGCCAGCGACGCTCCGGCGTTGATGATCGCCTGCGG
CCTGGCGTTGAGGAGTTTCGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilM | Acinetobacter baumannii D1279779 |
55.899 |
100 |
0.562 |
| comM | Acinetobacter nosocomialis M2 |
55.899 |
100 |
0.562 |
| comM | Acinetobacter baylyi ADP1 |
51.977 |
100 |
0.52 |
| pilM | Legionella pneumophila strain ERS1305867 |
46.61 |
100 |
0.466 |