Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GK020_RS01145 Genome accession   NZ_CP046392
Coordinates   250526..252013 (-) Length   495 a.a.
NCBI ID   WP_104473381.1    Uniprot ID   -
Organism   Acinetobacter indicus strain WMB-7     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 245526..257013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS01120 - 246017..246397 (-) 381 WP_104470544.1 hypothetical protein -
  GK020_RS01125 - 246501..246902 (+) 402 WP_005181530.1 MAPEG family protein -
  GK020_RS01130 ppa 247022..247546 (+) 525 WP_016659718.1 inorganic diphosphatase -
  GK020_RS01135 - 247649..248977 (-) 1329 WP_156188744.1 OprD family outer membrane porin -
  GK020_RS01140 - 249733..250467 (+) 735 WP_156188745.1 TorF family putative porin -
  GK020_RS01145 comM 250526..252013 (-) 1488 WP_104473381.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GK020_RS01150 - 252083..252310 (-) 228 WP_005181545.1 accessory factor UbiK family protein -
  GK020_RS01155 glnK 252587..252925 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  GK020_RS01160 - 252988..254391 (+) 1404 WP_104989220.1 ammonium transporter -
  GK020_RS01165 nrdR 254531..254989 (+) 459 WP_005181550.1 transcriptional regulator NrdR -
  GK020_RS01170 ribD 255013..256101 (+) 1089 WP_104989219.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54122.12 Da        Isoelectric Point: 7.3353

>NTDB_id=403782 GK020_RS01145 WP_104473381.1 250526..252013(-) (comM) [Acinetobacter indicus strain WMB-7]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSSEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQMQRQNKLNMALNPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=403782 GK020_RS01145 WP_104473381.1 250526..252013(-) (comM) [Acinetobacter indicus strain WMB-7]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCATCTATAGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTCCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTGCCCAAAGATGGTTCGCGT
CTGGATTTACCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAATTGCGTCCGGTCACCGGCACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGGTATTACCGGAACCCAATGCACAGGAAGCCGCACAATTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTACAGCCTTTTGCAGCAAGCTCGGAAACCCGCTTGGAACGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTTTTTAAAGGACCGCCCGGCACAGGCAAAACCCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCACTGGTCGGTGGTGGCTCGCATCCGAAACCGGGCGAAATTACCCTGGCTCATTTAG
GTGTACTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAAGAA
ATTGTGATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAGTGTTCTTCGGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATGCAAAGACAGAACAAGCTGAATATGGCATT
AAACCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.6

100

0.521
  comM Glaesserella parasuis strain SC1401

50.902

100

0.513
  comM Vibrio cholerae strain A1552

50.909

100

0.509
  comM Legionella pneumophila str. Paris

50.605

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.605

100

0.507
  comM Vibrio campbellii strain DS40M4

50.505

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.139

100

0.471

Multiple sequence alignment